BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0015.p (400 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 315 1e-85 YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 314 2e-85 NMB0176 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 312 8e-85 AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 310 4e-84 VC0786 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) V... 308 2e-83 >BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Bme Brucella melitensis Length = 416 Score = 315 bits (806), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 164/364 (45%), Positives = 219/364 (60%), Gaps = 6/364 (1%) Query: 2 IAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLERYRRNKL 61 ++PGY +PWAAPG+P K K+LF+ +P++ R Q+RW+ Q L NCT RY+ NK Sbjct: 47 VSPGYASPWAAPGIPLKAAKWLFQKHAPLILRLTTDPVQYRWLLQMLANCTDSRYKINKT 106 Query: 62 RMQRIAYYSRDCLHEFLAQHPFDYG-RSQGYLQLFRSRFDEDMAAPALALLEEAGIAHQR 120 RM R+A YSRDCL E +Y RSQG LQLFR ++ D + +L + G+ + Sbjct: 107 RMVRVAEYSRDCLIELRKDTGIEYDQRSQGTLQLFREQYQLDGIGKDIEVLRQDGVPFEV 166 Query: 121 LSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRFGTQVSG 180 L CV EP L HA+ + GL LP+DE GDC F L ++ E +GV+FRFG + Sbjct: 167 LDRDGCVNVEPALAHAKDKFVGGLRLPNDETGDCFKFTNALAKIAEGLGVKFRFGVNIKS 226 Query: 181 LRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGYSATIPV 240 L + GG++ G++ S G + + VVA G + AL+ LG+ P+YPVKGYS T P+ Sbjct: 227 LLMSGGKISGVETSE----GIVTAERYVVALGSYTPALIKALGLNAPIYPVKGYSITAPI 282 Query: 241 RFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVMRDWFPL 300 AP + V+DES K AITR+GD +RV G AE+ L AA TL + D FP Sbjct: 283 VDESRAPVSTVLDESYKIAITRLGDRIRVGGMAEVSGFTDDLPAARRATLDLSVTDLFP- 341 Query: 301 AGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVADLITGT 360 GDL A FW G RPMTPD P++G T NLF+N GHG+ GW M+ GSGR++ADLI+G Sbjct: 342 GGDLKAATFWSGLRPMTPDSTPIIGGTRYDNLFINAGHGTLGWTMACGSGRLLADLISGN 401 Query: 361 PPAI 364 I Sbjct: 402 KADI 405 >YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ype Yersinia pestis Length = 434 Score = 314 bits (805), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 167/364 (45%), Positives = 224/364 (61%), Gaps = 6/364 (1%) Query: 2 IAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLERYRRNKL 61 I+PGY PWAAPG+P K +K++F+ +P+ R S+ Q RW+ Q L NC Y NK Sbjct: 47 ISPGYAAPWAAPGVPLKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKS 106 Query: 62 RMQRIAYYSRDCLHEFLAQHPFDY-GRSQGYLQLFRSRFDEDMAAPALALLEEAGIAHQR 120 RM R+A YSRDCL + A Y GR G LQLFR+ D AA +A+L++AG+ + Sbjct: 107 RMVRLAEYSRDCLKDLRAATGIQYEGRQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSL 166 Query: 121 LSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRFGTQVSG 180 L+A Q EP L + GL LP+DE GDC +F +L ++ E+ GV+F F V Sbjct: 167 LTAEQLATVEPALAKVAHKLTGGLRLPNDETGDCKLFTERLAKMAEQAGVKFIFNRSVDK 226 Query: 181 LRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGYSATIPV 240 L V+G Q+ G+ + DA VVA G S ALLA L + +P+YP+KGYS TIP+ Sbjct: 227 LLVEGDQIAGVLCGD----DIIKADAYVVAFGAYSTALLAGL-VSIPVYPLKGYSLTIPI 281 Query: 241 RFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVMRDWFPL 300 P +AP + V+DE+ K AITR D +RV G AE+ QL A TL V+RD +P Sbjct: 282 TDPASAPFSTVLDETYKIAITRFDDRIRVGGMAEIVGFNTQLAPARRETLEMVVRDLYPH 341 Query: 301 AGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVADLITGT 360 GD+ A FW G RPMTPDG P++G TP++NL+LN GHG+ GW M+ GSG+++AD+I G Sbjct: 342 GGDISQAVFWSGLRPMTPDGTPIVGRTPLKNLYLNTGHGTLGWTMACGSGQLLADIIQGR 401 Query: 361 PPAI 364 PAI Sbjct: 402 RPAI 405 >NMB0176 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Nme Neisseria meningitidis MC58 Length = 418 Score = 312 bits (800), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 159/364 (43%), Positives = 218/364 (59%), Gaps = 5/364 (1%) Query: 2 IAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLERYRRNKL 61 ++ GY TPWAAPG+P K LK+LFK+ P++FRP S Q W+ Q L NCT Y+ NK Sbjct: 47 LSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWQMLQNCTAAHYQTNKE 106 Query: 62 RMQRIAYYSRDCLHEFLAQHPFDY-GRSQGYLQLFRSRFDEDMAAPALALLEEAGIAHQR 120 RM RI+ YSR+ F AQ ++ GR +G LQ+FR + + A +A+LE G+ ++R Sbjct: 107 RMVRISEYSREMFRRFEAQTGMNFEGRKKGTLQIFRQTKEVEAAKQDIAVLERYGVPYRR 166 Query: 121 LSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRFGTQVSG 180 L +C EP L + GL+LP D GDC +F L +LC+E GV+F F +S Sbjct: 167 LKPEECAEFEPALARVTAKIAGGLHLPADATGDCRLFTENLYKLCQEKGVRFHFNQNISR 226 Query: 181 LRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGYSATIPV 240 + G +++ ++ + G+ DA+V A G S +LA L + +P+YPVKGYS T+PV Sbjct: 227 IDHNGLRIKTVET----ETGRFEADAVVCALGCFSRTVLAQLDLNLPIYPVKGYSLTLPV 282 Query: 241 RFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVMRDWFPL 300 + AP + V+DES K AITR + +RV G AEL ++L TL V+ D FP Sbjct: 283 TNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLALVVNDLFPE 342 Query: 301 AGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVADLITGT 360 GDL A FW G RPMTPD PL+G T NLFLN GHG+ GW MSLGS ++ AD+++G Sbjct: 343 GGDLSQASFWSGLRPMTPDSTPLIGRTRFDNLFLNTGHGTLGWTMSLGSAKLTADIVSGK 402 Query: 361 PPAI 364 I Sbjct: 403 DTEI 406 >AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 418 Score = 310 bits (794), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/365 (44%), Positives = 216/365 (59%), Gaps = 5/365 (1%) Query: 2 IAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLERYRRNKL 61 ++PGY +PWAAPG+P K +K+LF +P++ RP WRW+SQ L NCT RY NK Sbjct: 47 VSPGYSSPWAAPGIPMKAMKWLFMKHAPLIIRPTADPAAWRWMSQMLRNCTSARYAINKS 106 Query: 62 RMQRIAYYSRDCLHEFLAQHPFDYG-RSQGYLQLFRSRFDEDMAAPALALLEEAGIAHQR 120 RM R+A YSRDCL + DY R QG L++FR++ D + +L G+ + Sbjct: 107 RMVRVAEYSRDCLMALREETGIDYDQRMQGTLEVFRTQKQFDAIGKDVDVLTAGGVPFEI 166 Query: 121 LSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRFGTQVSG 180 L C A EPGL A+ + GL LP DE GDC +F +L R+ EE GV F + T + Sbjct: 167 LDRDGCAAIEPGLAPAKEKIVGGLRLPGDETGDCFMFTTELARMAEEAGVTFLYDTGIMR 226 Query: 181 LRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGYSATIPV 240 V+GG+++ ++ + G + D V A G S + LG+ +P+YPVKGYS T+P+ Sbjct: 227 PIVEGGRIKAVETTR----GLIEADIFVAALGSYSPQFVRQLGLTLPVYPVKGYSITVPI 282 Query: 241 RFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVMRDWFPL 300 E AP + VMDE+ K AITR+G +R G AE+ L AA TL + D F Sbjct: 283 VKEERAPVSTVMDETFKVAITRLGSRIRAGGMAEIAGFSKDLPAARQETLAHSVEDLFGG 342 Query: 301 AGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVADLITGT 360 AGD A+FW G RPMTPDG P++G T NL+LN GHG+ GW MS GS RV+ADLI+G Sbjct: 343 AGDQSQAKFWCGLRPMTPDGTPVIGATRYSNLYLNTGHGTLGWTMSCGSARVLADLISGN 402 Query: 361 PPAID 365 P ID Sbjct: 403 KPEID 407 >VC0786 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Vch Vibrio cholerae Length = 421 Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 157/358 (43%), Positives = 216/358 (60%), Gaps = 5/358 (1%) Query: 2 IAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLERYRRNKL 61 I+ GY +PWAAPG+P K LK++ + +P+ +P + W+ + L NC L RY+ NK Sbjct: 48 ISYGYSSPWAAPGIPQKALKWMLEKHAPLKIQPSLDPALLSWMGKMLLNCQLSRYQVNKS 107 Query: 62 RMQRIAYYSRDCLHEFLAQHPFDY-GRSQGYLQLFRSRFDEDMAAPALALLEEAGIAHQR 120 RM IA YSR+CL + DY GR +G LQ+FR + LL ++G+ + Sbjct: 108 RMLAIANYSRECLKALNQTYSLDYQGRQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFEL 167 Query: 121 LSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRFGTQVSG 180 L+ AQC+ EPGL + + GL+LPDDE GDC +F +QL L ++ GV+F F + Sbjct: 168 LNVAQCLTHEPGLAPVQEKLVGGLWLPDDETGDCYLFCQQLTELAKQQGVRFHFDCHIQQ 227 Query: 181 LRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGYSATIPV 240 L +G ++ G+Q G L DA VVA G S +LL PLGI +P+YPVKGYS T+P+ Sbjct: 228 LVCEGKKIIGVQTD----LGLLKADAYVVALGSYSTSLLKPLGIEIPVYPVKGYSLTLPI 283 Query: 241 RFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVMRDWFPL 300 + AP++ VMDE+ K A+TR D +RVAGTAEL + A T+ V RD FP Sbjct: 284 IDEKFAPQSTVMDETYKVALTRFSDRIRVAGTAELAGFDPAIPEARKATIEMVARDLFPH 343 Query: 301 AGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVADLIT 358 GD QFW G RPMTPDG P++G TP NL+ N GHG+ GW M+ GS ++AD++T Sbjct: 344 GGDFAKGQFWTGFRPMTPDGTPIIGATPYTNLYTNTGHGTLGWTMACGSASILADVLT 401