BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0003.p         (53 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0196 [C] COG1282 NAD/NADP transhydrogenase beta subunit Pae Ps...    68   6e-12
RSc2733 [C] COG1282 NAD/NADP transhydrogenase beta subunit Rso R...    67   7e-12

>PA0196 [C] COG1282 NAD/NADP transhydrogenase beta subunit Pae
          Pseudomonas aeruginosa
          Length = 478

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 39/47 (82%), Gaps = 3/47 (6%)

Query: 1  MSMNLVTLLYLIASICFIQALKGLSHPATARRG---GGGGXAVSTAS 44
          MSMNLVTLLYLIAS+CFIQALKGLSHP T+RRG   G  G A++ A+
Sbjct: 1  MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVAT 47


>RSc2733 [C] COG1282 NAD/NADP transhydrogenase beta subunit Rso Ralstonia
          solanacearum
          Length = 486

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 32/33 (96%)

Query: 1  MSMNLVTLLYLIASICFIQALKGLSHPATARRG 33
          MSMNLVTLLYL+AS+CFIQALKGLSHP TARRG
Sbjct: 1  MSMNLVTLLYLLASVCFIQALKGLSHPGTARRG 33