BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0106.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

slr1861 [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protei...    59   3e-09

>slr1861 [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase)
           Syn Synechocystis
          Length = 143

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 8   LLQLHNDVAELDRLAEAVDEFCAGCALPGKLAFELNLVLEEVVVNVINYAFPDGGADEPI 67
           +L    D+  L+ + + + E      LP K A++L L ++E+  N+INY +    A+ P 
Sbjct: 3   ILNFSADLNALNSIGKHILEQAQAVGLPKKRAYKLRLAVDELATNIINYGY----ANAPG 58

Query: 68  HVRVVLETNSDEGRAVRVVAEVRDTGTAFDPLLGGPPDFVLDLDK--RPVGGLGVHFLKT 125
           H ++ ++  +D+    ++   + DTG  +DP        +L L+   RP+GGLG+     
Sbjct: 59  HNQISIQVEADD---CQLKVTMVDTGLPYDPRDRQFDQSILSLEAEDRPIGGLGIFLALQ 115

Query: 126 LMDEVSY--RRTERHNCL 141
            +DE +Y  R  +  +CL
Sbjct: 116 SVDEFTYEVRGNKNISCL 133