BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0079.p         (282 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1780 Non COG                                                       211   1e-54
PA0339 [S] COG3332 Uncharacterized conserved protein Pae Pseudom...   203   3e-52
BH1727 [S] COG3332 Uncharacterized conserved protein Bha Bacillu...   187   2e-47

>RSc1780 Non COG
          Length = 272

 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/253 (50%), Positives = 156/253 (61%), Gaps = 16/253 (6%)

Query: 1   MCLIIFAWKVIPGMPLILAANRDEFYARPAADAGWWNDHPHIYAGRDLQ----GGGTWLG 56
           MCLI+ AW   P   L++AANRDEFY RPAA   WW+D PH+ AGRDL       GTW+G
Sbjct: 1   MCLILTAWHAHPAYALVVAANRDEFYDRPAAPLAWWSDAPHVLAGRDLAQVVGHAGTWMG 60

Query: 57  VTRDGRFAALTNVRAPSERRADAPTRGQLVADYLAS-DLDPQAYLRQIEPQAQRYNGFNL 115
           +TRDGRFAALTN RAPSERR DA +RG+LVA++LA+ D    AYL Q++ +   YNG+NL
Sbjct: 61  MTRDGRFAALTNYRAPSERRPDARSRGELVANFLAAEDASIPAYLDQLKARNGVYNGYNL 120

Query: 116 LLGNRETMVWYSNRGQEDPRNGQPLEYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAP 175
           L   R+ + W SNR  E PR   P   GVYG+SNALLDTPW K+    A FA  L     
Sbjct: 121 LTATRDELWWTSNRA-EAPRQLAP---GVYGLSNALLDTPWFKVRHRVAAFAEALAADTG 176

Query: 176 EE-------TFFEMLTDGTRANDCRLPDTGVGLEKERMLSPIFIRSPDYGTRCSTVLRVP 228
                     + ++L +   A    LP TGV  E E++LS  FIRSP YGTR STVLR+ 
Sbjct: 177 RHGNAIDVARYLDLLAETREAPLGALPATGVAPEWEKLLSAAFIRSPRYGTRASTVLRIR 236

Query: 229 IVGEPVLTEHVVD 241
             G   +TE   D
Sbjct: 237 HDGCFDVTERRFD 249


>PA0339 [S] COG3332 Uncharacterized conserved protein Pae Pseudomonas
           aeruginosa
          Length = 251

 Score =  203 bits (517), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 155/244 (63%), Gaps = 10/244 (4%)

Query: 1   MCLIIFAWKVIPGMPLILAANRDEFYARPAADAGWWNDHPHIYAGRDLQGGGTWLGVTRD 60
           MCLI+FAW+    +PL++AANRDEFYARP+     W D   ++AGRDL+ GGTWLG+   
Sbjct: 1   MCLIVFAWQPGHALPLLVAANRDEFYARPSLPLAAWEDAEGVFAGRDLEAGGTWLGLGPA 60

Query: 61  GRFAALTNVRAPSERRADAPTRGQLVADYLASDLDPQAYLRQIEPQAQRYNGFNLLLGNR 120
           GRFAALTNVR PS+      +RG+LVAD+L    +P  YL Q+  +A  Y+GFNLL+G+R
Sbjct: 61  GRFAALTNVRDPSQALGKR-SRGELVADFLRGGGNPADYLAQVAGRAADYSGFNLLIGDR 119

Query: 121 ETMVWYSNRGQEDPRNGQP--LEYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAPEET 178
             + W+ N     PR G P  L  G+YG+SNA LDTPWPKL +A+A  A  L +  P+  
Sbjct: 120 HQL-WHYN-----PRVGPPRLLPAGIYGLSNAALDTPWPKLLKARAALAERLAEPHPQAL 173

Query: 179 FFEMLTDGTRANDCRLPDTGVGLEKERMLSPIFIRSPDYGTRCSTVLRVPIVGEPVLTEH 238
              +      A D +LPDTGVGL  ER+LS +FI SP YGTR S+V+RV   G   + E 
Sbjct: 174 LELLADA-APAADGQLPDTGVGLATERLLSSVFIASPSYGTRASSVVRVHADGTREMIER 232

Query: 239 VVDP 242
              P
Sbjct: 233 SFGP 236


>BH1727 [S] COG3332 Uncharacterized conserved protein Bha Bacillus
           halodurans
          Length = 269

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 148/251 (58%), Gaps = 11/251 (4%)

Query: 1   MCLIIFAWKVIPGMPLILAANRDEFYARPAADAGWWNDHPHIYAGRDLQGGGTWLGVTRD 60
           MCL+ FA++     P + AANRDE+Y RP   A  W + P++  GRDL+ GGTWLG T++
Sbjct: 1   MCLLTFAYQTNKRFPFVFAANRDEYYDRPTLFAHEWKEDPNVIGGRDLKKGGTWLGFTKE 60

Query: 61  GRFAALTNVRAPSERRADAP--TRGQLVADYLASDLDPQAYLRQIEPQAQRYNGFNLLLG 118
           G+ AALTNVR  S + +  P  +RG +V DYL S+   Q ++ ++   A  ++G+NL+ G
Sbjct: 61  GKIAALTNVR-DSFKHSGIPFQSRGFIVQDYLTSNTSAQLFMERLIQTADEFDGYNLVFG 119

Query: 119 NRETMVWYSNRGQEDPRNGQPLEYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAPEET 178
           +   + +Y+NR ++    G+ L+ G Y +SN  +++ WPK  + +    S+L +    ET
Sbjct: 120 SYHDLYYYTNRMEK----GEKLKPGYYMLSNGQMNSHWPKAVKVRTHLQSVLEREQDIET 175

Query: 179 FFE----MLTDGTRANDCRLPDTGVGLEKERMLSPIFIRSPDYGTRCSTVLRVPIVGEPV 234
             +    ++ D  R  D +LPDTGVG+E ER+LSPIFI    YGTR +TV+     GE  
Sbjct: 176 IIKKLLAIMQDEERFPDEQLPDTGVGIEWERILSPIFINGKTYGTRATTVIICTDEGESF 235

Query: 235 LTEHVVDPMAM 245
             E    PM +
Sbjct: 236 FLEWNYGPMGI 246