BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0054.p         (181 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1091 [K] COG1954 Glycerol-3-phosphate responsive antiterminato...    91   2e-18
BS_glpP [K] COG1954 Glycerol-3-phosphate responsive antiterminat...    89   7e-18
ygcP [K] COG1954 Glycerol-3-phosphate responsive antiterminator ...    87   2e-17
ZygcP [K] COG1954 Glycerol-3-phosphate responsive antiterminator...    87   2e-17
ECs3623 Non COG                                                        87   2e-17

>BH1091 [K] COG1954 Glycerol-3-phosphate responsive antiterminator
           (mRNA-binding) Bha Bacillus halodurans
          Length = 183

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 7   TQHLPAFLASAAEVGIVANVELRELQALSTRVRDAGKFLMLNVDTCEGLAQDKAAIDYLV 66
           T+ L  FL +  +  ++ N  + +L++L   V+   K L L+ D  +GL  D+ A  ++ 
Sbjct: 17  TKELERFLETEYKYIVLLNSHVAQLRSLMRLVKAKKKLLFLHADLVQGLKTDEFAAQFIA 76

Query: 67  ALGVP-SLVSTRVATLLRASRAGMITMQKVFVTDRTTWPRSLKALEQSEPNLVQLMPAPM 125
               P  L+STR   +L A +  ++ +Q++F+ D      S K LE ++P+ ++++P  M
Sbjct: 77  QEIRPYGLISTRKNVVLTAKKHKLVAVQRLFLLDSQALESSYKLLEITQPDFIEVLPGVM 136

Query: 126 LTQLKPADRAVLPPIVASGFVCNADDARAALAGGAVALSTSEQTMWN 172
              +K        PI+A G V   D+  AAL+ GAVA+STS++ +W 
Sbjct: 137 PHIIKEVYEHTKIPIIAGGLVRTRDEVDAALSSGAVAVSTSKKELWR 183


>BS_glpP [K] COG1954 Glycerol-3-phosphate responsive antiterminator
           (mRNA-binding) Bsu Bacillus subtilis
          Length = 192

 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 3   AVYGTQHLPAFLASAAEVGIVANVELRELQALSTRVRDAGKFLMLNVDTCEGLAQDKAAI 62
           A+   +    FL S+   G++ ++ L +L+ +    +  GK +M++VD  +G+  D+   
Sbjct: 12  AIRNMKQFDEFLNSSFSYGVILDIHLGQLKGVIKEAQKHGKNMMVHVDLIQGIKHDEYGA 71

Query: 63  DYLVALGVPS-LVSTRVATLLRASRAGMITMQKVFVTDRTTWPRSLKALEQSEPNLVQLM 121
           +++     P+ ++STR   + +A +  +  +Q++F+ D +   +S++ + + +P+ ++++
Sbjct: 72  EFICQDIKPAGIISTRSNVIAKAKQKKIYAIQRLFLLDTSAMEKSMEFIGKHKPDFIEVL 131

Query: 122 PAPMLTQLKPADRAVLPPIVASGFVCNADDARAALAGGAVALSTSEQTMW 171
           P  + + ++        PI A GF+   +D   AL  GAVA++TS   +W
Sbjct: 132 PGIVPSLIQEIKEKTGIPIFAGGFIRTEEDVEQALKAGAVAVTTSNTKLW 181


>ygcP [K] COG1954 Glycerol-3-phosphate responsive antiterminator
           (mRNA-binding) Eco Escherichia coli K12
          Length = 191

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 37  RVRDAGKFLMLNVDTCEGLAQDKAAIDYL-VALGVPSLVSTRVATLLRASRA-GMITMQK 94
           ++++AGK+  ++VD  EG +  +  I +L +      ++ST+ A++L+A+RA G   + +
Sbjct: 49  KIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTK-ASMLKAARAEGFFCIHR 107

Query: 95  VFVTDRTTWPRSLKALEQSEPNLVQLMPAPMLTQLKPADRAVLPPIVASGFVCNADDARA 154
           +F+ D  ++    K + QS P+ ++++P  M   L      +  P++A G VC+ +DAR 
Sbjct: 108 LFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARN 167

Query: 155 ALAGGAVALSTSEQTMWNL 173
           A+  G VALST+   +W L
Sbjct: 168 AINAGVVALSTTNTGVWTL 186


>ZygcP [K] COG1954 Glycerol-3-phosphate responsive antiterminator
           (mRNA-binding) EcZ Escherichia coli O157:H7 EDL933
          Length = 191

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 37  RVRDAGKFLMLNVDTCEGLAQDKAAIDYL-VALGVPSLVSTRVATLLRASRA-GMITMQK 94
           ++++AGK+  ++VD  EG +  +  I +L +      ++ST+ A++L+A+RA G   + +
Sbjct: 49  KIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTK-ASMLKAARAEGFFCIHR 107

Query: 95  VFVTDRTTWPRSLKALEQSEPNLVQLMPAPMLTQLKPADRAVLPPIVASGFVCNADDARA 154
           +F+ D  ++    K + QS P+ ++++P  M   L      +  P++A G VC+ +DAR 
Sbjct: 108 LFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARN 167

Query: 155 ALAGGAVALSTSEQTMWNL 173
           A+  G VALST+   +W L
Sbjct: 168 AINAGVVALSTTNTGVWTL 186


>ECs3623 Non COG
          Length = 191

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 37  RVRDAGKFLMLNVDTCEGLAQDKAAIDYL-VALGVPSLVSTRVATLLRASRA-GMITMQK 94
           ++++AGK+  ++VD  EG +  +  I +L +      ++ST+ A++L+A+RA G   + +
Sbjct: 49  KIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTK-ASMLKAARAEGFFCIHR 107

Query: 95  VFVTDRTTWPRSLKALEQSEPNLVQLMPAPMLTQLKPADRAVLPPIVASGFVCNADDARA 154
           +F+ D  ++    K + QS P+ ++++P  M   L      +  P++A G VC+ +DAR 
Sbjct: 108 LFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARN 167

Query: 155 ALAGGAVALSTSEQTMWNL 173
           A+  G VALST+   +W L
Sbjct: 168 AINAGVVALSTTNTGVWTL 186