BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0041.p (1156 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20609_1 Non COG 675 0.0 AGc4388_1 Non COG 664 0.0 MT3561 Non COG 397 e-110 Rv3454 Non COG 296 1e-79 AGc4388_2 [T] COG0642 Signal transduction histidine kinase Atu A... 276 2e-73 >SMb20609_1 Non COG Length = 675 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/695 (50%), Positives = 470/695 (67%), Gaps = 29/695 (4%) Query: 5 ATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGA 64 A QRI+ VRR+YN WVAN+TLEDYALR+T S RR+S R++ TA+GA SFLALEAI GA Sbjct: 3 ARQRIIPVRREYNRWVANQTLEDYALRFTAKSARRFSSARISQTAIGAISFLALEAIGGA 62 Query: 65 ITLSYGFTNAFWAIICVMVLFFATGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIY 124 IT+SYG TNA AI+ ++ GLPIS YA R+GVD+DLLTRGA FGYIGSTITSLIY Sbjct: 63 ITMSYGTTNAIVAILVASLMILIVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIY 122 Query: 125 ASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLW 184 ASFTFI FA+EA+IM+ A+E+ G+PL GY++ ++++IP+V +G+ LI+R Q+ TQP W Sbjct: 123 ASFTFILFAIEASIMSGALELALGIPLWIGYIVSAVMVIPLVTHGVKLISRFQLVTQPFW 182 Query: 185 LVLLVLPYACVLYKEPEALSNLMSFAGRAEEG------SSFNLTLFGAAATVAFSLIAQV 238 +VL VLP+A + + + E + +++AG +SF+L FGAA+ V F+L AQ+ Sbjct: 183 IVLNVLPFAFIAFADWEKVGLWLAYAGIHHTSGPPGTLASFHLVEFGAASAVIFALTAQI 242 Query: 239 GEQVDFLRFLPQKTAANRGRWWSALLLAGPGXTHPAGPGWILLGGAKMLGGTLLAFLAIQ 298 GEQVDFLRFLP + R A+ LAG G W+++G K+L G+ L LA+ Sbjct: 243 GEQVDFLRFLPPD-GERKLRHRIAVFLAGSG--------WVIVGAPKLLAGSFLVVLALS 293 Query: 299 HEVPMARAVEPTQMYLIGYQYVFGNPAFALGAVVLFVVVSQIKINVTNAYAGSLAWSNFF 358 VP RA +P QMY + Y+F + AL + FVVVSQ+KINV NAYAGSLAWSNFF Sbjct: 294 TGVPSTRAADPAQMYYTAFGYIFPSDTAALLLMAAFVVVSQLKINVMNAYAGSLAWSNFF 353 Query: 359 ARLTHSHPGRVVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKP 418 +RLTHSHPGRV+WLVFNV IA+LLMELG++ LE L ++S+VA++W+ + ADL +NKP Sbjct: 354 SRLTHSHPGRVIWLVFNVAIALLLMELGIYRLLEETLGIFSIVAMAWLSTISADLFVNKP 413 Query: 419 LRLSPAHIEFKRAHLYDVNPVGVGSMVIATLLSTLAMSGVLGKTIAAMAPFIALGTALVT 478 L L+P IEFKRAHLYD+NPVG+G+M ++TL + +A G G+ A++AP+IAL TA V Sbjct: 414 LGLAPPGIEFKRAHLYDINPVGLGTMGVSTLFALVAHFGAAGEIAASLAPYIALVTAFVV 473 Query: 479 APLIALATGSRYYIARRDTLSEQNYRPVTPGQAHSVLDCVICGNAFETPDMAHCPAYQGA 538 +PLIA T ++Y+AR +P A S + C IC + FE DMA CPAY Sbjct: 474 SPLIAWWTEGKFYLAR---------KPRKSWLAESEITCSICEHPFEPEDMAWCPAYAAP 524 Query: 539 ICSLCCSLDARCKDRCKTPRARLPNQILHTLRQLIPARFALKLNTRIGHYLSVFGLLAGG 598 ICSLCCSLD+RC D CK P+ARL Q+ + ++P KL TR+G Y + G Sbjct: 525 ICSLCCSLDSRCHDMCK-PKARLNTQVATVAKAVLPETVVAKLATRLGRYAISAVISITG 583 Query: 599 LAIVLWMLYFQQMADLSGLSLSAPDSLRGVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQ 658 + ++L M+ Q A S + + +F + ++ GV +W+ VL ++SR VA+ Sbjct: 584 IGVILAMIAHQTTAA----SPETAEVVERTIAIVFFVFAILAGVVSWFYVLAHDSRVVAE 639 Query: 659 EESERQTNLLLQEIEAHKQTDAELQRAKEAAESAN 693 EES RQ LL+EI AHK+TDA LQ AKE AESAN Sbjct: 640 EESSRQNTALLKEIAAHKKTDAALQDAKERAESAN 674 >AGc4388_1 Non COG Length = 675 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/695 (49%), Positives = 467/695 (67%), Gaps = 29/695 (4%) Query: 5 ATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGA 64 A QRI+ VRR+YN WVAN+TLEDYALR+T S R++S R+++TA+GA SFLALEAI GA Sbjct: 3 ARQRIIPVRREYNRWVANQTLEDYALRFTAKSARQFSSNRISHTAIGAISFLALEAIGGA 62 Query: 65 ITLSYGFTNAFWAIICVMVLFFATGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIY 124 ITLSYG TNAF+AII + A GLPIS YA R+GVD+DLLTRGA FGYIGSTITSLIY Sbjct: 63 ITLSYGTTNAFYAIIVAAIAMLAVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIY 122 Query: 125 ASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLW 184 A+FTF+ FA+EA+IM+ A+E+ G+PL GY++ ++++IP+V +G+ LI+R Q+ TQP W Sbjct: 123 AAFTFMLFAIEASIMSGALELALGIPLWIGYIISAVMVIPLVTHGVRLISRFQIITQPFW 182 Query: 185 LVLLVLPYACVLYKEPE------ALSNLMSFAGRAEEGSSFNLTLFGAAATVAFSLIAQV 238 +VL +LP+ + + E A S + +G + FNL FGAA+ V +L++Q+ Sbjct: 183 IVLNILPFIFIALMDWEKYDLWRAFSGIHHASGPPGTVADFNLVEFGAASAVILALMSQI 242 Query: 239 GEQVDFLRFLPQKTAANRGRWWSALLLAGPGXTHPAGPGWILLGGAKMLGGTLLAFLAIQ 298 GEQVDFLRFLP + +R R A+ LAG G W+++G K+L G+ L L Sbjct: 243 GEQVDFLRFLPAE-GQSRVRHRIAVFLAGAG--------WVVVGVPKLLAGSFLVVLTFS 293 Query: 299 HEVPMARAVEPTQMYLIGYQYVFGNPAFALGAVVLFVVVSQIKINVTNAYAGSLAWSNFF 358 V + RA +P QMYL + Y+ N A+ +V FVVVSQ+KINV NAYAGSLAWSNFF Sbjct: 294 SGVSVDRAADPAQMYLTAFGYMVPNETAAMLLMVAFVVVSQLKINVMNAYAGSLAWSNFF 353 Query: 359 ARLTHSHPGRVVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKP 418 +RLTHSHPGRVVWLVFNV IA+LLMELG++ LE L ++S++A++W+ + ADL INKP Sbjct: 354 SRLTHSHPGRVVWLVFNVAIALLLMELGIYRLLEETLGIFSIIAMAWLCTISADLFINKP 413 Query: 419 LRLSPAHIEFKRAHLYDVNPVGVGSMVIATLLSTLAMSGVLGKTIAAMAPFIALGTALVT 478 L L+P IEFKRAHLYD+NPVGVGSM ++ ++ +A G G A++AP++ L A + Sbjct: 414 LGLAPPGIEFKRAHLYDINPVGVGSMALSATIALMAHFGTFGPLAASLAPYLTLIVAFIA 473 Query: 479 APLIALATGSRYYIARRDTLSEQNYRPVTPGQAHSVLDCVICGNAFETPDMAHCPAYQGA 538 +P +ALAT ++Y+AR +P S + C IC + FE DMA CPAY Sbjct: 474 SPALALATKGKFYLAR---------KPRQKWHEESSITCSICEHPFEPEDMAWCPAYAAP 524 Query: 539 ICSLCCSLDARCKDRCKTPRARLPNQILHTLRQLIPARFALKLNTRIGHYLSVFGLLAGG 598 ICSLCCSLD+RC D CK P+A+L Q+ + +P + KL TR+G Y + Sbjct: 525 ICSLCCSLDSRCHDMCK-PKAKLNYQVASVAKTFLPRQLVAKLATRLGRYGMAAAIAVTA 583 Query: 599 LAIVLWMLYFQQMADLSGLSLSAPDSLRGVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQ 658 + +L ++ Q + S + D + + +F + V+ G+ W+LVL ++SR VA+ Sbjct: 584 IGGILALIAHQ----VGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHDSRVVAE 639 Query: 659 EESERQTNLLLQEIEAHKQTDAELQRAKEAAESAN 693 EES RQ LLL+EI AHK+TDA LQ AKE AE+AN Sbjct: 640 EESSRQNTLLLKEIAAHKKTDAALQDAKETAEAAN 674 >MT3561 Non COG Length = 562 Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust. Identities = 229/550 (41%), Positives = 333/550 (60%), Gaps = 22/550 (4%) Query: 23 ETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGAITLSYGFTNAFWAIICVM 82 ETLEDY LR P S+RRW + +ALG ++LA AI + +++G NA I Sbjct: 25 ETLEDYTLRLAPRSYRRWPPAVVGISALGGIAYLADFAIGANVGITWGTANALCGIAIFA 84 Query: 83 VLFFATGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIYASFTFIFFALEAAIMAQA 142 ++ F TGLP++YYAARY +D+DL+TRG+GFGY GS +T++I+A+FTFIFFALE +IMAQ Sbjct: 85 LVVFVTGLPLAYYAARYNIDLDLITRGSGFGYYGSVVTNVIFATFTFIFFALEGSIMAQG 144 Query: 143 IEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLWLVLLVLPYACVLYKEPEA 202 +++ +PL GY +LII P+V YG+ ++++LQ+WT PLWL+L+ P+ ++ P++ Sbjct: 145 LKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVSHPDS 204 Query: 203 LSNLMSFAGRAEEGS-SFNLTLFGAAATVAFSLIAQVGEQVDFLRFLPQKTAANRGRWWS 261 + S+AG+ G SF L AA V SLIAQ+ EQ+D+LRF+P +T N RWW+ Sbjct: 205 IGQFFSYAGKDGHGGLSFGSVLL--AAGVCLSLIAQIAEQIDYLRFMPPRTPENANRWWT 262 Query: 262 ALLLAGPGXTHPAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARAV--EPTQMYLIGYQY 319 LL AGPGW+ G K + G LA + + +P + + +P ++ Y+ Sbjct: 263 WTLL--------AGPGWVAFGATKQIIGLFLA-VYLMANIPGSSTIANQPVHQFMQIYR- 312 Query: 320 VFGNPAFALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIA 379 F AL V+ VV+SQIKINVTNAY+GSLAW+N F RLT +PGRVV+L N+ IA Sbjct: 313 TFVPGWLALTLAVILVVLSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVNLAIA 372 Query: 380 VLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKP-LRLSPAHIEFKRAHLYDVNP 438 ++LME +F+ L +L Y+ ++W+ AV +D+ NK L LSP EF+R LY +NP Sbjct: 373 LILMEANMFDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLYAINP 432 Query: 439 VGVGSMVIATLLSTLAMSGVLGKTIAAMAPFIALGTALVTAPLIALATGSRYYIARRDTL 498 VG GS+++A LS + G LG + +P +A+ TALV P++A AT +YY+ R Sbjct: 433 VGFGSLLLAAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRRTHDG 492 Query: 499 SEQNYRPVTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSLDARCKD------ 552 + + +VL C +C FE PDM C + +CSLC S D + + Sbjct: 493 IDLPMYDEHGNPSAAVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVLPGLA 552 Query: 553 RCKTPRARLP 562 R P ++P Sbjct: 553 RAHIPGDQVP 562 >Rv3454 Non COG Length = 422 Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 169/434 (38%), Positives = 250/434 (57%), Gaps = 22/434 (5%) Query: 139 MAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLWLVLLVLPYACVLYK 198 MAQ +++ +PL GY +LII P+V YG+ ++++LQ+WT PLWL+L+ P+ ++ Sbjct: 1 MAQGLKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVS 60 Query: 199 EPEALSNLMSFAGRAEEGS-SFNLTLFGAAATVAFSLIAQVGEQVDFLRFLPQKTAANRG 257 P+++ S+AG+ G SF L AA V SLIAQ+ EQ+D+LRF+P +T N Sbjct: 61 HPDSIGQFFSYAGKDGHGGLSFGSVLL--AAGVCLSLIAQIAEQIDYLRFMPPRTPENAN 118 Query: 258 RWWSALLLAGPGXTHPAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARAV--EPTQMYLI 315 RWW+ LLAGPG W+ G K + G LA + + +P + + +P ++ Sbjct: 119 RWWTWTLLAGPG--------WVAFGATKQIIGLFLA-VYLMANIPGSSTIANQPVHQFMQ 169 Query: 316 GYQYVFGNPAFALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFN 375 Y+ F AL V+ VV+SQIKINVTNAY+GSLAW+N F RLT +PGRVV+L N Sbjct: 170 IYR-TFVPGWLALTLAVILVVLSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVN 228 Query: 376 VLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKP-LRLSPAHIEFKRAHLY 434 + IA++LME +F+ L +L Y+ ++W+ AV +D+ NK L LSP EF+R LY Sbjct: 229 LAIALILMEANMFDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLY 288 Query: 435 DVNPVGVGSMVIATLLSTLAMSGVLGKTIAAMAPFIALGTALVTAPLIALATGSRYYIAR 494 +NPVG GS+++A LS + G LG + +P +A+ TALV P++A AT +YY+ R Sbjct: 289 AINPVGFGSLLLAAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRR 348 Query: 495 RDTLSEQNYRPVTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSLDARCKD-- 552 + + +VL C +C FE PDM C + +CSLC S D + + Sbjct: 349 THDGIDLPMYDEHGNPSAAVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVL 408 Query: 553 ----RCKTPRARLP 562 R P ++P Sbjct: 409 PGLARAHIPGDQVP 422 >AGc4388_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 246 Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/245 (53%), Positives = 178/245 (72%) Query: 695 AKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSGEHLLSLIDGLLD 754 AKSR+V G+SHELRTPLN++LGYAQIL D TIP R+ AI +IRRS +HL LIDGLLD Sbjct: 1 AKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAPRQSAIKVIRRSADHLSGLIDGLLD 60 Query: 755 IAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFEKSGRLPQIVHADQKRLR 814 I+KIEAG++++ S+E+ ++ FL+Q+V MF PQA+ KGL FR E++ LPQ V D+KRLR Sbjct: 61 ISKIEAGRLQVYSNEINIKDFLDQVVDMFRPQAQAKGLEFRHERTAALPQYVRTDEKRLR 120 Query: 815 QILINLLGNAVKFTDHGGVTLKLRYAREIAYFDVIDSGIGIADEDLERIFLPFERSSAAN 874 QIL+NLL NA+KFTD G VT + Y ++A F V D+G GIA++DL RI+ PF+R A + Sbjct: 121 QILVNLLSNAIKFTDEGSVTFDVAYRSQVASFTVSDTGRGIAEKDLARIYEPFQRGEAES 180 Query: 875 LREDIGTGLGLAISRMLVHIMGGELSVQSRVGHGSSFHLKIYLPEVHVPRPRIKLEDQMS 934 +R G GLGL I+R+L + +GGE+SV S +GS+F +++ L VH P E + Sbjct: 181 VRPMPGLGLGLTITRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKTIR 240 Query: 935 GYTGP 939 Y+GP Sbjct: 241 SYSGP 245