BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0036.p (561 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 545 e-154 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 358 2e-98 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 341 3e-93 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 337 3e-92 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 320 7e-87 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust. Identities = 301/513 (58%), Positives = 390/513 (76%) Query: 1 MSGWTIKRKLLALILTSICCFAALSSYLISRQAAIANDMQELYERDYQAASIIGQIDGLL 60 M WT+KRKL L+ + I F L+ +L+ RQAA D++ LY++DY+AASIIGQIDGLL Sbjct: 1 MRNWTVKRKLATLVASIIIAFVCLTVFLLGRQAAATADIRSLYDKDYRAASIIGQIDGLL 60 Query: 61 TRVDINILRMIAIGDPSSVAAWKEQNTSRFRQVDQLIDDLRRASSPATAGQIVTLQTSYL 120 TRVDINILRMIAIGDP+S++ WK QNT RF +VDQL+ +L ++ P+ A I TL +Y Sbjct: 61 TRVDINILRMIAIGDPASISGWKAQNTERFNKVDQLLVELDASADPSMAASIKTLGEAYG 120 Query: 121 AMRKGMEHQVQAVQSGDMKGAGEINRAEVKDNADKTFSTLGDLKQKQALAAQHKVEFQQN 180 MRKGMEHQV+AV++GD+K GEIN+ EVKDNADKTF TL +LK Q L A++KV+ Q+ Sbjct: 121 RMRKGMEHQVEAVEAGDIKRGGEINKNEVKDNADKTFGTLAELKSAQDLIAKNKVQAQEA 180 Query: 181 EAASTRQFSFGATLAVALLVLTGGLWLVRNLLLQLGGEPAYAAAVAKAIAEGNLATEVRI 240 AA R S A +AL L GL ++R+LL QLGGEP+ AA A+A+G+L+ + + Sbjct: 181 AAALARVVSITAAALIALGSLGLGLLMLRDLLRQLGGEPSVAAQAVSAMAQGDLSRVIAV 240 Query: 241 KETDRASLLFAMRNMRDSLAGIVGDVRGGVTTIAKASSEIANGNLDLSSRTEQQASSLEE 300 DR SLL ++ M+ SL+GIV VR ++A AS++IA GN DLS RTEQQAS+L+E Sbjct: 241 DADDRTSLLAKLKEMQASLSGIVATVRNNAESVATASAQIAQGNQDLSHRTEQQASALQE 300 Query: 301 TTSAMLQLAAAVRQNADNAQQGNQLAVSASTVAAQGGAVVNKVVATMEAINDSSLKIVDI 360 T++ M +L + V NA+NA+Q NQLA AS+VAA+GG VV++VV M+ IND S KI DI Sbjct: 301 TSATMDELGSTVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMMKGINDGSKKIADI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKLLIDDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI S Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKALITSS 420 Query: 421 VSSVGEGSRLVAEAGKTMAEVVRSVRRVTDVIGEISAASLEQSAGIEQVKQAITQMDDAT 480 V V +G+ LV AG TM ++V +++RV++++ EIS+AS EQS+G+ QV QA++QMD+AT Sbjct: 421 VEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEAT 480 Query: 481 QQNAALVEEATAASQSLRDQSVQLEQAVSLFKL 513 QQNAALVE++ AA+ SL+ Q+ QL QAV++FKL Sbjct: 481 QQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 358 bits (919), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 209/305 (68%), Positives = 245/305 (80%) Query: 209 RNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVGDVRG 268 R L LGG+PAYAA VA IA G+L+ E+ + DR SLL+AM MR +L +G +RG Sbjct: 216 RGLQRALGGDPAYAAEVANRIAGGDLSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRG 275 Query: 269 GVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQLAVS 328 TI A+ EIA+GNLDLSSRTEQQASSLEET SAM +L + V+QNADNA Q NQLAVS Sbjct: 276 ASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVS 335 Query: 329 ASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQ 388 AS VA +GG VV++VV TM +IN SS KIVDII VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 336 ASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 395 Query: 389 GRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRSVRRV 448 GRGFAVVA EVR+LAQRSAAAAKEIK LIDDSV++V GS LV EAG TM E+V SVRRV Sbjct: 396 GRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRV 455 Query: 449 TDVIGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQLEQAV 508 TD++GEI+AAS EQ +GIE+V A+TQ+DDATQQNAALVE+A AA+QSL++Q+ L Q V Sbjct: 456 TDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVV 515 Query: 509 SLFKL 513 + F+L Sbjct: 516 AQFRL 520 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 341 bits (874), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 206/343 (60%), Positives = 255/343 (74%), Gaps = 8/343 (2%) Query: 175 VEFQQNEAASTRQFSFGATLAVALLVLTGGLWL-----VRNLLLQLGGEPAYAAAVAKAI 229 V Q+ E A R S A L +A+LV+ G + L +RN+ LGGEPAYA +A+ I Sbjct: 174 VFLQEVETAYVR--SLIANL-IAILVVGGAVTLAMFLIIRNVQRGLGGEPAYATEIARRI 230 Query: 230 AEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVGDVRGGVTTIAKASSEIANGNLDLSS 289 A+G+LA V+ + DR S+LFAM M+ L G +G ++ +IA A+ +IA GN DLS Sbjct: 231 ADGDLAVRVQTRPDDRNSMLFAMARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQ 290 Query: 290 RTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQLAVSASTVAAQGGAVVNKVVATMEA 349 RTE+QASSLEET S+M +L + V+QNADNA+Q + LAV+AS +A +GG VV +VV TM Sbjct: 291 RTEEQASSLEETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAG 350 Query: 350 INDSSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAA 409 INDSS KI DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA A Sbjct: 351 INDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGA 410 Query: 410 AKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRSVRRVTDVIGEISAASLEQSAGIEQV 469 AKEIK+LI DSV V G+ LVAEAG + EVV +V+RVTD++GEISAAS EQS+GIEQV Sbjct: 411 AKEIKVLISDSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQV 470 Query: 470 KQAITQMDDATQQNAALVEEATAASQSLRDQSVQLEQAVSLFK 512 QA+ QMD+ TQQNAALVEEA AA+ SL +Q+ L AV+ F+ Sbjct: 471 NQAVNQMDEVTQQNAALVEEAAAAALSLEEQATLLRDAVASFR 513 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 337 bits (865), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 196/363 (53%), Positives = 257/363 (70%), Gaps = 7/363 (1%) Query: 154 DKTFSTLGDLKQKQALAAQHKVEFQQNEAASTR-QFSFGATLAVALLVLTGGLWLVRNLL 212 D+ + + + QA +H V + A+ + Q A LA L + TG ++ R + Sbjct: 157 DRYYVLVDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGA-FITRTIT 215 Query: 213 LQLGGEPAYAAAVAKAIAEGNLATEVRIKETDR-ASLLFAMRNMRDSLAGIVGDVRGGVT 271 + +A +A+A+A+GNL + + D LL A+++M ++L GIV VRGG Sbjct: 216 RPIN----HAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTD 271 Query: 272 TIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQLAVSAST 331 TI +ASSE+A+GN+DLSSRTEQQASSLEET +AM QL + V+QNADNAQ+ ++LA +AS Sbjct: 272 TITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASM 331 Query: 332 VAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRG 391 VA +GG V++ + TM IN SS KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 332 VATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 391 Query: 392 FAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRSVRRVTDV 451 FAVVA EVR+LAQRSAAAAKEIK LI+DSV V G+ V EAG+ + +VV ++ VT++ Sbjct: 392 FAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNI 451 Query: 452 IGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQLEQAVSLF 511 + EISA+S EQS GIEQ+ +AITQMD ATQ+NA+LVEE+ A+Q+L+DQ+ QL VS F Sbjct: 452 VSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTF 511 Query: 512 KLK 514 KL Sbjct: 512 KLH 514 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 320 bits (819), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 194/307 (63%), Positives = 231/307 (75%) Query: 207 LVRNLLLQLGGEPAYAAAVAKAIAEGNLATEVRIKETDRASLLFAMRNMRDSLAGIVGDV 266 L R L QLGG+PAYAA +A IA G+LA V + DR S+LFAM M+ L G + + Sbjct: 207 LARGLQRQLGGDPAYAADIAARIAAGDLAMRVETRPGDRDSVLFAMAQMQRELTGTISHI 266 Query: 267 RGGVTTIAKASSEIANGNLDLSSRTEQQASSLEETTSAMLQLAAAVRQNADNAQQGNQLA 326 + +IA A+ +IA GN DLS RTEQQASSLEET S+M +L + V+QNADNA+Q + LA Sbjct: 267 KHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLA 326 Query: 327 VSASTVAAQGGAVVNKVVATMEAINDSSLKIVDIISVIDGIAFQTNILALNAAVEAARAG 386 V+AS VA +GG VV +VV TM INDSS KI DII VI+GIAFQTNILALNAAVEAARAG Sbjct: 327 VNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAG 386 Query: 387 EQGRGFAVVASEVRALAQRSAAAAKEIKLLIDDSVSSVGEGSRLVAEAGKTMAEVVRSVR 446 EQGRGFAVVA EVR+LAQRSA AAKEIK LI DSV V G+ LV EAG + EVV +V+ Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGTALVEEAGAVIDEVVVAVK 446 Query: 447 RVTDVIGEISAASLEQSAGIEQVKQAITQMDDATQQNAALVEEATAASQSLRDQSVQLEQ 506 RVTD++GEISAAS EQS+GIEQV QA+ QMD TQQNAALVE+A AA+ SL +Q+ L Sbjct: 447 RVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAALSLEEQAQVLRT 506 Query: 507 AVSLFKL 513 AV F++ Sbjct: 507 AVGRFQM 513