BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0015.p         (250 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc1613 [S] COG5446 Predicted integral membrane protein Atu Agro...   181   2e-45
PA2946 [S] COG5446 Predicted integral membrane protein Pae Pseud...   175   1e-43
mll1309 Non COG                                                       159   6e-39
BMEI0692 [S] COG5446 Predicted integral membrane protein Bme Bru...    85   1e-16

>AGc1613 [S] COG5446 Predicted integral membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 241

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/248 (41%), Positives = 142/248 (57%), Gaps = 18/248 (7%)

Query: 4   TVFRRMASAVVVAGALSGVLLSGVQQFQVEKIILKAEEYEKAGESAAPAADDHAHEPAAQ 63
           + FR +    ++ G L G  +S +Q F    +IL+AE +E AGE+       H+H+    
Sbjct: 7   SFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEA------PHSHD---- 56

Query: 64  AAAHEHSHANAHEHEHAHDANAWEPADGAERTGYTVLANVSMAVGFALLLVAAFALSGRQ 123
                     A    H H+  AW PADG ERT YTV ANV  A+G+AL+L    +L G  
Sbjct: 57  -----APAPGAAVPAHEHNDEAWAPADGFERTAYTVAANVLTAIGYALVLTGLISLRGTN 111

Query: 124 ISWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQLWWVMTAAMTAASLGLFVF 183
             WR GLLWG+AG+    +AP +GLPPE+PG+ AA L+ARQ+WW+ T A TA  + L  F
Sbjct: 112 TGWREGLLWGVAGFAAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGGIALIAF 171

Query: 184 TRGWPWK-LVGVMLLVVPHFIGAP-QPEVHGSVAPEELAQAFIRATAAANAVFWLALGGL 241
            R  PW  L+ ++L+V PH IGAP  PE   ++AP  L + FI A    + VFW  +G L
Sbjct: 172 RRE-PWAVLLALVLIVAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTL 230

Query: 242 TGFFYRRF 249
           + FF +RF
Sbjct: 231 SAFFLKRF 238


>PA2946 [S] COG5446 Predicted integral membrane protein Pae Pseudomonas
           aeruginosa
          Length = 364

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 137/227 (60%), Gaps = 18/227 (7%)

Query: 5   VFRRMASAVVVAGALSGVLLSGVQQFQVEKIILKAEEYEKAGESAAPAADDHAHEPAAQA 64
           + +R+A     AG L+ +LL+ +Q   V  +IL+AE YEK   S   AA  H H P   A
Sbjct: 132 MIKRIAQTAGFAGLLAALLLTLLQILWVTPLILEAETYEK---SEPVAAQPHEHAPGVAA 188

Query: 65  AAHEHSHANAHEHEHAHDANAWEPADGAERTGYTVLANVSMAVGFALLLVAAFALSGRQI 124
                         H HD  AWEP DG +RT  T   N+ +AVGFAL+L   F L     
Sbjct: 189 --------------HVHDEEAWEPEDGWQRTLSTTGGNLVVAVGFALMLAGLFTLRAPGQ 234

Query: 125 SWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQLWWVMTAAMTAASLGLFVFT 184
           +W+ GLLWGLAGY VF +APSLGLPPE+PGT AA L  RQ WW+ TAA TA  L L VF 
Sbjct: 235 TWQ-GLLWGLAGYAVFCLAPSLGLPPELPGTAAADLVQRQYWWIATAAATAVGLALLVFG 293

Query: 185 RGWPWKLVGVMLLVVPHFIGAPQPEVHGSVAPEELAQAFIRATAAAN 231
             WP KLVG +LL +PH  GAPQPEVH S+APE LAQ F+ A+  +N
Sbjct: 294 GNWPLKLVGAVLLALPHLFGAPQPEVHASLAPEALAQRFVVASLVSN 340


>mll1309 Non COG
          Length = 271

 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 132/251 (52%), Gaps = 26/251 (10%)

Query: 4   TVFRRMASAVVVAGALSGVLLSGVQQFQVEKIILKAEEYEKAGESAAPAADDHAHE---- 59
            +FR +     +AG ++GV+L+ +Q +    +ILKAE YE+A          H+H+    
Sbjct: 2   NLFRNVVFIAAIAGLVAGVVLACMQAYATVPLILKAEVYEQA-------EGGHSHDHAAA 54

Query: 60  -------------PAAQAAAHEHSHANAHEHEHAH--DANAWEPADGAERTGYTVLANVS 104
                         +A  AA+  S A       A   +   W PADG ER  + V++NV 
Sbjct: 55  PATPTGAASGTAMSSAPPAANSMSAATPAPAVAAAPAEDEGWAPADGFERFAFNVVSNVV 114

Query: 105 MAVGFALLLVAAFALSGRQISWRSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQ 164
             +GFAL+LVA    +G   +WR G+ WGLAG+ VF +AP LGLPPE+P   AA L  RQ
Sbjct: 115 TGIGFALILVAVSEFAGGIGNWRQGVFWGLAGFAVFTLAPGLGLPPELPAMPAADLTQRQ 174

Query: 165 LWWVMTAAMTAASLGLFVFTRGWPWKLVGVMLLVVPHFIGAPQPEVHGSVAPEELAQAFI 224
           +WWV T   TA  LGL  F +  P  ++ V L+V PH +GAPQP+   +  PE L   F+
Sbjct: 175 IWWVATVIATAIGLGLIAFRKSLPLAILAVALIVAPHIVGAPQPDSFETPIPEGLHHQFV 234

Query: 225 RATAAANAVFW 235
            A    N VFW
Sbjct: 235 VAVTLTNLVFW 245


>BMEI0692 [S] COG5446 Predicted integral membrane protein Bme Brucella
           melitensis
          Length = 131

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%)

Query: 127 RSGLLWGLAGYGVFFVAPSLGLPPEVPGTLAAPLQARQLWWVMTAAMTAASLGLFVFTRG 186
           ++G+ WGLAG+      P+LGL PE+P   AA L  RQLWW+ T  M+   + L +    
Sbjct: 2   QNGIFWGLAGFFAVAFLPALGLSPELPAMPAADLAERQLWWIATVVMSGLGIYLLILRHE 61

Query: 187 WPWKLVGVMLLVVPHFIGAPQPEVHGSVAPEELAQAFIRATAAANAVFWLALGGLTGFFY 246
              K++G++L+V PH  GAP PE   S  P  LA  +  A+ A N   W  +G   G+F 
Sbjct: 62  LWAKVLGLVLIVAPHLYGAPHPEDISSPVPSLLASQYAVASLATNLFMWAVIGLALGWFI 121

Query: 247 RRF 249
           + +
Sbjct: 122 QHY 124