BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0003.p (388 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport... 253 6e-67 RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport... 247 3e-65 RSc2441 [E] COG0683 ABC-type branched-chain amino acid transport... 245 1e-64 SMc01946 [E] COG0683 ABC-type branched-chain amino acid transpor... 165 2e-40 BMEI0263 [E] COG0683 ABC-type branched-chain amino acid transpor... 163 6e-40 >RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 377 Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 219/378 (57%), Gaps = 9/378 (2%) Query: 10 LLALALAGAGCFFASGSAVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDINNSKP 69 L L +A A C A GSA + + +G AAPM+G G ++ LA+++ N +KP Sbjct: 3 LKQLWVAAALC--ALGSAASAQEVIKLGFAAPMTGAQAQYGKDMQNGVTLAIEEFNATKP 60 Query: 70 VIAGEPVLFKLLPQDDRADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYAAAGIP 129 IAG+ V F+L+ +DD+ADP+TG +A V + +VGH+NSG IPA+R+Y AGI Sbjct: 61 KIAGKDVKFQLVSEDDQADPKTGTTVAQKLVDGGIKGMVGHFNSGTSIPASRVYNQAGIA 120 Query: 130 HVAPAVTAPAYTQQGDASAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVFGSTYA 189 +A A TAP YT+QG + FR++ D + + + V++L N+A++DD T +G A Sbjct: 121 QIAMA-TAPEYTKQGYKTTFRMMTSDTQQGSVVGTFAVKKLGYKNLAIVDDRTAYGQGLA 179 Query: 190 DEFVKSLTTLQGRVTGRYAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLVQDLRR 249 DEF K+ + R + K SDF +IL I+ +PD VF+ G + Q+A LV+ +R Sbjct: 180 DEFEKAAKAAGATIVRREYTNDKASDFKAILTQIKSKNPDAVFYGGAEGQSAPLVKQMRE 239 Query: 250 LQIRAPLVGIGGLVGPT--FLKLAGA-AGEGVSVVEPGLPSYKGPQWSHFEQAWKARYQD 306 L ++A L + G + T F+KLAGA A EGV GLP + P + ++Q ++ R+ Sbjct: 240 LGMKATL--MSGEMSKTDDFIKLAGAPAAEGVVCSLAGLPLEQMPGGAGYKQRYEKRFGS 297 Query: 307 EIYLYAPFAYDAVRVIAAAMREADSVEPAKVTASLHRIRYKGISGT-IAFDAQGNLRDPV 365 + Y+P+AYD + AM A S +P+K L +G++ A+D +G+L+D Sbjct: 298 TVQTYSPYAYDGAMALMKAMVAAGSSDPSKYLPILAATNAQGVTAKHYAYDDKGDLKDGG 357 Query: 366 FTLYRVSGGRWRVVRSIG 383 T+Y+V+GG+W + S+G Sbjct: 358 ITVYKVTGGKWVPLESVG 375 >RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 380 Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/349 (40%), Positives = 205/349 (58%), Gaps = 3/349 (0%) Query: 29 AQA-RTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDINNSKPVIAGEPVLFKLLPQDDRA 87 AQA +TV IG A P++G + G E A+LAV+D+N VI G+ V F+LL +DD+A Sbjct: 26 AQAEQTVRIGNAGPLTGGAAHWGKDNENGARLAVEDLNRKGLVIGGKKVRFELLSEDDQA 85 Query: 88 DPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYAAAGIPHVAPAVTAPAYTQQGDAS 147 DPR ++A+ V S V A++GH+NSG IPA+ IYA AGIP ++ A T P TQQG + Sbjct: 86 DPRQAMVVANKLVDSGVKAMLGHFNSGAAIPASAIYARAGIPDISVA-TNPQLTQQGFRN 144 Query: 148 AFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVFGSTYADEFVKSLTTLQGRVTGRY 207 FRI+ D + + + V L VA+IDD T +G A+ F K + L V + Sbjct: 145 TFRIIASDDDVGAALSRFAVTTLNAKKVAIIDDRTAYGQGAAEVFEKGVKGLGASVVSQQ 204 Query: 208 AVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLVQDLRRLQIRAPLVGIGGLVGPTF 267 S K +DF +IL SI+ + PDV+F+ G+DAQ + + +++L I A L+G GL Sbjct: 205 FTSDKATDFMAILTSIKRTRPDVIFYGGMDAQGGLIARQMKQLGIGAKLLGTDGLCTGAV 264 Query: 268 LKL-AGAAGEGVSVVEPGLPSYKGPQWSHFEQAWKARYQDEIYLYAPFAYDAVRVIAAAM 326 K+ AGA + G P S F + +KAR+ E+ YAP+ YD++ VIAAAM Sbjct: 265 AKISAGAVNGTLYCTRGGKALDMMPNGSDFARRYKARFGTEVLNYAPYLYDSLMVIAAAM 324 Query: 327 READSVEPAKVTASLHRIRYKGISGTIAFDAQGNLRDPVFTLYRVSGGR 375 + ADSVEP + +L +I G +G +AFD +GNL+ P FT++ G+ Sbjct: 325 QAADSVEPPRYLPALAKISLDGTTGPVAFDEKGNLKTPGFTVFTYQDGK 373 >RSc2441 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 336 Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 125/330 (37%), Positives = 192/330 (58%) Query: 50 GVSLERAAQLAVDDINNSKPVIAGEPVLFKLLPQDDRADPRTGELIADYFVKSKVAAVVG 109 G E A+LAV+D+N I G+ + +L+ +DD ADP+TG +A V KV AVVG Sbjct: 2 GKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVVG 61 Query: 110 HWNSGVGIPAARIYAAAGIPHVAPAVTAPAYTQQGDASAFRIVPHDGEGARLTADYVVRE 169 H NSGV IPA++IY+ AGI ++P+ T P YT+QG + +R+V D + A+Y + Sbjct: 62 HLNSGVSIPASKIYSDAGIVQISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAKT 121 Query: 170 LKGVNVAVIDDSTVFGSTYADEFVKSLTTLQGRVTGRYAVSSKTSDFNSILRSIRDSHPD 229 L +VA++DD+T +G ADEF K+ V R A + K +DF +IL I+ PD Sbjct: 122 LGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREATNDKATDFKAILTKIKGKKPD 181 Query: 230 VVFFAGLDAQAAQLVQDLRRLQIRAPLVGIGGLVGPTFLKLAGAAGEGVSVVEPGLPSYK 289 V+ + G+DA + + L I A +VG G+ +LAG A + + E GL K Sbjct: 182 VIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALSK 241 Query: 290 GPQWSHFEQAWKARYQDEIYLYAPFAYDAVRVIAAAMREADSVEPAKVTASLHRIRYKGI 349 + + FE+ ++ R++ + +YAPF YDAV V+ AM+ ++SV+PAK+ A++ Y G+ Sbjct: 242 MEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHGV 301 Query: 350 SGTIAFDAQGNLRDPVFTLYRVSGGRWRVV 379 G IAFD +G+L++ TLY + V+ Sbjct: 302 IGNIAFDDKGDLKEGSITLYNYKDKKKTVL 331 >SMc01946 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 372 Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/368 (30%), Positives = 195/368 (52%), Gaps = 15/368 (4%) Query: 5 LRQSLLLALALAGAGCFFASGSAVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDI 64 +++SLL A+AL F SG+A A +L+G+ P++GP+ + G L++ A+ A +DI Sbjct: 1 MKKSLLSAVALTAMVAF--SGTAWAD---ILVGVGGPLTGPNAAFGAQLQKGAEQAAEDI 55 Query: 65 NNSKPVIAGEPVLFKLLPQDDRADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYA 124 N + I GE + K++ DD +DP+ G +A FV V VVGH+NSGV IPA+ IYA Sbjct: 56 NAAGG-INGEQI--KVVLGDDVSDPKQGVSVAQKFVADGVKFVVGHFNSGVSIPASEIYA 112 Query: 125 AAGIPHVAPAVTAPAYTQQGDASAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVF 184 GI V PA T P +T++G + FR D + + Y+ K VAVI D T + Sbjct: 113 ENGILQVTPASTNPQFTERGLWNTFRTCGRDDQQGAVAGAYIAANFKDAKVAVIHDKTPY 172 Query: 185 GSTYADEFVKSLTTLQGRVTGRY-AVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQL 243 G ADE KS+ G Y +++ DF++++ ++ + +V++ GL +A + Sbjct: 173 GQGLADETKKSMNEA-GVTEALYEGINTGDKDFSALIAKMKQAGVSIVYYGGLHTEAGLI 231 Query: 244 VQDLRRLQIRAPLVGIGGLVGPTFLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWKAR 303 ++ ++ ++A ++ G+V +AG A +G + P K P + ++A Sbjct: 232 MRQMKDQGLKATMMSGDGIVSNELASIAGDAVDGTLMTFAPDPR-KSPAAKDLVEKFRAA 290 Query: 304 -YQDEIYLYAPFAYDAVRVIAAAMREADSVEPAKVTASLH-RIRYKGISGTIAFDAQGNL 361 ++ E Y +AY A++VIA + A + +P V ++ + +K G + FD +G++ Sbjct: 291 GFEPEAYTL--YAYAALQVIAEGAKAAGNTDPQAVAEAIKAKGPFKTAIGELGFDEKGDI 348 Query: 362 RDPVFTLY 369 P + +Y Sbjct: 349 TRPDYVMY 356 >BMEI0263 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 376 Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 106/372 (28%), Positives = 196/372 (52%), Gaps = 13/372 (3%) Query: 5 LRQSLLLALALAGAGCFFASGSAVAQARTVLIGLAAPMSGPSGSTGVSLERAAQLAVDDI 64 +R++L +ALA F GSA A VL+G+ P++GP+ G +++ A+ A+ ++ Sbjct: 6 MRKTLFSGVALAAVIAF--GGSAWAD---VLVGIGIPVTGPNAVYGAQIQKGAEAAIKEV 60 Query: 65 NNSKPVIAGEPVLFKLLPQDDRADPRTGELIADYFVKSKVAAVVGHWNSGVGIPAARIYA 124 N++ I GE + + DD +DP+ G +A+ F V V+GH+NSGV IPA+++YA Sbjct: 61 NDAGG-INGEKIAITI--GDDVSDPKQGISVANKFAADGVKFVIGHFNSGVTIPASQVYA 117 Query: 125 AAGIPHVAPAVTAPAYTQQGDASAFRIVPHDGEGARLTADYVVRELKGVNVAVIDDSTVF 184 GI ++P T P YT+QG + FR D + + Y+ K +AV+ D T + Sbjct: 118 ENGILEISPGATNPQYTEQGLWNTFRTCGRDDQQGTVAGQYIFDHFKDAKIAVVHDKTPY 177 Query: 185 GSTYADEFVKSLTTLQGRVTGRYAVSSKTSDFNSILRSIRDSHPDVVFFAGLDAQAAQLV 244 G ADE K L L + T V+ DF++++ ++ + +VV++ GL +A ++ Sbjct: 178 GQGLADETKKKLNELGTKETLYEGVNVGEKDFSALIAKLKQAGVNVVYWGGLHPEAGLII 237 Query: 245 QDLRRLQIRAPLVGIGGLVGPTFLKLAGAAGEGVSVVEPGLPSYKGPQWSHFEQAWK-AR 303 + + ++A + G+V +AG A EG ++ G P + + ++ A Sbjct: 238 RQMADQGLKAQFISGDGIVSNELASIAGPAVEG-TLNTFGPDPRNNPDNAELVKKFRDAG 296 Query: 304 YQDEIYLYAPFAYDAVRVIAAAMREADSVEPAKVTASL-HRIRYKGISGTIAFDAQGNLR 362 ++ E Y ++Y AV+ +A A + A S +P +V ++ + +K + G +++D +G+ + Sbjct: 297 FEPEAYTL--YSYAAVQSLAQAAKAAGSNDPQEVAKAMKEKGPFKTVLGDLSYDEKGDPK 354 Query: 363 DPVFTLYRVSGG 374 P + +Y+ G Sbjct: 355 LPGYVMYKWEKG 366