BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0363.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0181 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 308 5e-84 AGpA256 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 239 4e-63 AGpA261 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 117 2e-26 PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 113 5e-25 STM0333 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 112 9e-25 >PA0181 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 310 Score = 308 bits (790), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 151/220 (68%), Positives = 168/220 (76%) Query: 26 GGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFENRSVDLITEGFDAAIAGG 85 G QP+GTLKVSMG FGR YI+PLLGEFL RYP I PDWHF+NR VDLI EGFDAAI GG Sbjct: 87 GNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIVPDWHFDNRQVDLIGEGFDAAIGGG 146 Query: 86 TELSPGVVARELAPAHRVLLASPAYLEAHPALRSPADLAEHAGILIRSPQTGRVRPFSLR 145 EL PGVVAR L P H +LLASP YL P +R P DL GI IRSPQTGRVR + LR Sbjct: 147 FELPPGVVARNLTPGHLILLASPTYLRDKPPIRHPGDLGGFDGIRIRSPQTGRVRSWPLR 206 Query: 146 DHGGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVSMPHALLYLDRGTLVRVLPDWYVD 205 G++AP+ L++RMTMSD A CEVA GLGITLV M HA YL+ G LVRVLPDWYVD Sbjct: 207 RRNGEEAPIELRERMTMSDPEATCEVAAMGLGITLVCMQHAYAYLESGALVRVLPDWYVD 266 Query: 206 TGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERLAERFSA 245 G SLY+ A +LLPAKTRVFVDFVV++FRR+ LA RFSA Sbjct: 267 AGNTSLYYAANKLLPAKTRVFVDFVVDYFRRQDLARRFSA 306 >AGpA256 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 309 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 111/218 (50%), Positives = 151/218 (69%) Query: 27 GQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFENRSVDLITEGFDAAIAGGT 86 G+P G LK+SM F Y++P L +FL RYPG++PDWHF++R VDLI EGFDAAI GG Sbjct: 88 GEPVGVLKLSMSLSFAMGYVLPALPDFLARYPGVRPDWHFDSRKVDLIAEGFDAAIGGGF 147 Query: 87 ELSPGVVARELAPAHRVLLASPAYLEAHPALRSPADLAEHAGILIRSPQTGRVRPFSLRD 146 EL+PG+V+ LAP H + +ASP+Y A SP DLA+HAGIL+RS +GR+R + +RD Sbjct: 148 ELNPGIVSTTLAPVHVIAVASPSYFAARRRPTSPVDLADHAGILMRSSNSGRIRQWMMRD 207 Query: 147 HGGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVSMPHALLYLDRGTLVRVLPDWYVDT 206 G++ L + + MSDA + A AGLGI L+++P L +++ G L R+LP WY D Sbjct: 208 AQGREERALLNETIVMSDAAPMVQAAIAGLGIALLAVPDVLPHMESGALERILPKWYADA 267 Query: 207 GMLSLYFTAARLLPAKTRVFVDFVVEHFRRERLAERFS 244 G +SLY++ L P KTR F+DF E+FRRERL+ RF+ Sbjct: 268 GSISLYYSGRVLQPLKTRAFIDFYTEYFRRERLSARFA 305 >AGpA261 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 328 Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 16/212 (7%) Query: 29 PAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFENRSVDLITEGFDAAIAGGTEL 88 P GTL+++ F R +IVP L +F +YP + D + VDL+ FD A+ TEL Sbjct: 109 PRGTLRIAAPASFARMHIVPGLADFCRQYPDLALDLRISDSIVDLVEGAFDVAVRY-TEL 167 Query: 89 S-PGVVARELAPAHRVLLASPAYLEAHPALRSPADLAEHAGILIRSPQTGRVRPFSLRDH 147 S VAR LAP +RVL+ASP YLE H +P DLAEH +++ G + ++ R Sbjct: 168 SDSSFVARRLAPDNRVLVASPEYLEKHGRPSTPDDLAEHTCLVV-----GALDLWTFRGK 222 Query: 148 GGQQAPVTLQQRMT----MSDANAACEVAEAGLGITLVSMPHALLYLDRGTLVRVLPDW- 202 G V +++R+T ++D A + A AGLGI L++ A L G LV VLP++ Sbjct: 223 GS----VVIERRVTPSLRINDGTAVRDAASAGLGIALMATWCASEELQSGALVPVLPEYP 278 Query: 203 YVDTGMLSLYFTAARLLPAKTRVFVDFVVEHF 234 + T L + ++R L K RVF+D++V F Sbjct: 279 LISTQTLWALYPSSRELAPKVRVFIDWLVNRF 310 >PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 2/214 (0%) Query: 26 GGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFENRSVDLITEGFDAAIAGG 85 G + +G LKV + + R I P L EF ++P I+ + +RSVDL+ EG D + G Sbjct: 86 GSRASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELELGSSDRSVDLVQEGVDCVLRVG 145 Query: 86 TELSPGVVARELAPAHRVLLASPAYLEAHPALRSPADLAEHAGILIRSPQTGRVRPFSLR 145 + +VAR L + ASPAYLE H R+PADL H + SP +GRV P+ R Sbjct: 146 QLGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPADLDRHWAVNYASPSSGRVLPWEYR 205 Query: 146 DHGGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVSMPHALLYLDRGTLVRVLPDWYVD 205 + G+ L+ R+T+++A + +GLG+ + +L RG L VLP W + Sbjct: 206 E-DGRTLTRALRSRVTVNNAESYIACCLSGLGLIQIPAYDVREHLQRGELREVLPQWRAE 264 Query: 206 TGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 239 + R L + R FVD+ +E R RL Sbjct: 265 AMPAYALYPHRRHLSRRVRAFVDW-LEQLLRARL 297 >STM0333 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 321 Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 3/208 (1%) Query: 27 GQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFENRSVDLITEGFDAAIAGGT 86 G AG + ++ GFG +Y+ L F+ YP I +R VDL+ EG D I G Sbjct: 104 GVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVKLTLTDREVDLVEEGIDIEIRVGD 163 Query: 87 ELSPGVVARELAPAHRVLLASPAYLEAHPALRSPADLAEHAGILIRSPQTGRVRPFSLRD 146 +++ +AR+LA R+L ASP YLE H S + L +H ++I+ + + L D Sbjct: 164 DINELYIARQLATNRRILCASPEYLERHGKPESVSALVQHDCLMIQEKNSA-FGNWILTD 222 Query: 147 HGGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVSMPHALLYLDRGTLVRVLPDWYVDT 206 G QQ L + + + A G GITL S Y++RG LVRVLP WY + Sbjct: 223 -GKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLRSEWDVAQYIERGELVRVLPQWYQEA 281 Query: 207 GMLSLYFTAARLLPAKTRVFVDFVVEHF 234 + ++Y T + ++ +DF+ EH Sbjct: 282 NIWAVY-TRRSSSSDRIKICIDFLTEHL 308