BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0346.p (501 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC3063 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotei... 473 e-133 PA4513_2 [P] COG0369 Sulfite reductase, alpha subunit (flavoprot... 399 e-111 VC0384 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotei... 211 2e-54 BH0609 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotei... 192 1e-48 AGc238 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotei... 185 2e-46 >CC3063 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Ccr Caulobacter vibrioides Length = 504 Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/499 (55%), Positives = 325/499 (65%), Gaps = 8/499 (1%) Query: 4 RYLMAALVALTYLVFCVMTFLRHR-RAQQLQLAQWGTVQATGPQTVLVVFASQTGTAEQL 62 R++ A +V Y +FC+ LR R +Q + A Q +G + VLV +ASQTG AE+L Sbjct: 13 RWVWAGVVVALYALFCLAIALREAWRGRQARKAADALSQGSG-EPVLVAYASQTGFAEEL 71 Query: 63 AWQTAQSLRSGGLVVRVLPAGQLTDADLQATRLALFVASTTGEGDAPDDASALARQLGSS 122 A TA++L G V + +T DL ALFV STTGEGDAPD A A R + Sbjct: 72 ATATAKALADTGAPVTLKDLSAVTAGDLAGR--ALFVVSTTGEGDAPDPARAFIRDV-MK 128 Query: 123 DSTALPDLRFGVLALGDRSYQQYCAFGHALHAWLCRRHAQPLFDAIEVDNGDEGALRHWQ 182 D L LR+GVLALGD SY YCAFG +L AWL R QPLFD +EVD+ D ALRHWQ Sbjct: 129 DEADLSALRYGVLALGDSSYAHYCAFGRSLDAWLSGRGGQPLFDRVEVDDADPAALRHWQ 188 Query: 183 HQLGVLSGHSDEADWSAPAYGRWRLAGRRVLNPGSAGEPVFHLSLTPLDLPSPQWQAGDI 242 QL L+G +D DW+ P Y W LA R +LNPGS G +HL LTP WQAGDI Sbjct: 189 GQLATLTGVTDAPDWTRPTYDAWTLAERTLLNPGSPGGEAWHLRLTPPK--GAVWQAGDI 246 Query: 243 AEIGPHNSGAAVNAFLQAIGRQDDSLRAALATRLLPHEADQLAALRSLPDEELLAALPAL 302 EIGP N A V A + A+ ++ LA LP +A L ALR LP E L L AL Sbjct: 247 VEIGPRNDPAQVAALIAALDLPAEAADT-LAGLRLPQDAAALDALRGLPLEALAERLTAL 305 Query: 303 PHRAYSIASLPADGALELMVRLMHLPDGRAGLGSGWLGLHAQPGQEIALRVRSNRSFHGP 362 PHR YSIASLP DG +EL+VRLM DG GLGSGWL HA G I RVR NRSFH P Sbjct: 306 PHREYSIASLPDDGGVELIVRLMTRADGAPGLGSGWLCRHAPIGAAIEARVRVNRSFHAP 365 Query: 363 GDDRPLILIGNGTGLAGLRAHLRERVAAGQRRNWLLFGERSRQHDFFHQQELQEWQAQGW 422 RPLILIG+GTGLAGLRAHL+ R AAG R NWL+FGER+ HD+FH+ EL+ WQA G Sbjct: 366 ETKRPLILIGSGTGLAGLRAHLKARAAAGVRWNWLIFGERTAAHDYFHRAELEAWQASGL 425 Query: 423 LQRLDLAFSRDQAERVYVQDKLRAAADVLRQWVEEGASLYVCGSLQGMAGGVALALQEIL 482 L RLDLAFSRDQAERVYVQ +LR +AD+LR+WV GA++YVCGSL+GM+ AL EIL Sbjct: 426 LDRLDLAFSRDQAERVYVQHRLRESADILRRWVANGAAIYVCGSLEGMSREAHTALVEIL 485 Query: 483 GEDALQALAEQGRYRRDVY 501 G L+ L ++GRYRRDVY Sbjct: 486 GAPMLERLTDEGRYRRDVY 504 >PA4513_2 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Pae Pseudomonas aeruginosa Length = 455 Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/459 (51%), Positives = 299/459 (65%), Gaps = 14/459 (3%) Query: 53 ASQTGTAEQLAWQTAQSLRSGGLVVRVLPAGQLTDADLQATRLALFVASTTGEGDAPDDA 112 ASQ+G AEQLAWQ+A L++ GL VRV +L L R ALFV ST G+G+APD A Sbjct: 1 ASQSGFAEQLAWQSAGQLQAAGLPVRVESLARLDAGQLAEARKALFVVSTFGDGEAPDSA 60 Query: 113 SALARQLGSSDSTALPDLRFGVLALGDRSYQQYCAFGHALHAWLCRRHAQPLFDAIEVDN 172 R++ + +L L + +LALGDR Y+Q+C F + WL + A+ LF +EVD+ Sbjct: 61 RGFERKV-LGQAASLDGLSYALLALGDRQYEQFCGFARRMQGWLQGQGARSLFAPVEVDD 119 Query: 173 GDEGALRHWQHQLGVLSGHSDEADWSAPAYGRWRLAGRRVLNPGSAGEPVFHLSLTPLDL 232 GD ALR WQ L ++G + A W APA+ W LA R LNPGS GE + L L Sbjct: 120 GDAAALRQWQESLAEVTGGAAPAAWEAPAFEVWSLARRECLNPGSQGESTWLLDLRAPAN 179 Query: 233 PSPQWQAGDIAEIGPHNSGAAVNAFLQ----------AIGRQDDSLRAALATRLLPHEAD 282 + QW+AGD+ EI PH + + +LQ A+ + SL ALA RLLP D Sbjct: 180 SAIQWRAGDLLEIVPHQAPVRIREWLQRHNLDGQARVAVEGVEQSLEQALAGRLLP---D 236 Query: 283 QLAALRSLPDEELLAALPALPHRAYSIASLPADGALELMVRLMHLPDGRAGLGSGWLGLH 342 L L + LL AL L R YSIASL +DG L+L+VR DG G+ SGWL + Sbjct: 237 SFEHLVGLHPQALLDALIPLSVRQYSIASLQSDGDLQLIVRQEQHADGSLGICSGWLTEY 296 Query: 343 AQPGQEIALRVRSNRSFHGPGDDRPLILIGNGTGLAGLRAHLRERVAAGQRRNWLLFGER 402 G + LR+R N FH P DD PLILIGNGTGLAGLR+ LR +AAG++RNWLLFGER Sbjct: 297 LPLGAALTLRLRRNAGFHLPEDDVPLILIGNGTGLAGLRSLLRASIAAGRKRNWLLFGER 356 Query: 403 SRQHDFFHQQELQEWQAQGWLQRLDLAFSRDQAERVYVQDKLRAAADVLRQWVEEGASLY 462 + HD++ + EL++ A+G LQRLDLAFSRDQAE++YVQD+L AAD LR+W++EGA+LY Sbjct: 357 NFAHDYYCRAELEQALARGELQRLDLAFSRDQAEKIYVQDRLHEAADELRRWIDEGAALY 416 Query: 463 VCGSLQGMAGGVALALQEILGEDALQALAEQGRYRRDVY 501 VCGSLQGMAGGV L+E+LGE+ALQ LA++GRYRRDVY Sbjct: 417 VCGSLQGMAGGVDRVLREVLGEEALQRLADEGRYRRDVY 455 >VC0384 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Vch Vibrio cholerae Length = 614 Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 168/541 (31%), Positives = 248/541 (45%), Gaps = 96/541 (17%) Query: 50 VVFASQTGTAEQLAWQTAQSLRSGGLVVRVLPAGQLTDADLQATRLALFVASTTGEGDAP 109 ++FASQTG A+ +A + ++ G+ ++ A DL +FVAST GEG+AP Sbjct: 81 IIFASQTGNAKGVAQALLKEAQAAGIQAQLFDASDYKGKDLAKETHVIFVASTNGEGEAP 140 Query: 110 DDASALARQLGSSDSTALPDLRFGVLALGDRSYQQYCAFGHALHAWLCRRHAQPLFDAIE 169 D+A AL L S + LP+L++GVL LGD SYQ +C G +L AQ L + ++ Sbjct: 141 DNALALHEFLKSKKAPKLPNLKYGVLGLGDSSYQFFCQTGKDFDQFLENLGAQRLVERLD 200 Query: 170 VDNGDEGALRHWQHQ-LGVL-----------------------SGHSDEADWSAPAYGRW 205 D + A W+ Q L +L S +S E ++A Sbjct: 201 ADVDYQAAATEWRKQVLSILKDELTGAAAVTSVATFAVSQTAESHYSKEQPYTASLSTSQ 260 Query: 206 RLAGRRVLNPGSAGEPVFHLSLTPLDLPSPQWQAGDIAEIGPHNSGAAVNAFLQAIG--- 262 ++ GR +G+ V H+ + D +Q GD + N VNA L ++G Sbjct: 261 KITGR------DSGKDVRHIEIDLAD-SGITYQPGDALGVWYENRPQLVNALLDSVGLSG 313 Query: 263 ---RQDDSLRAALATRLLPH---------------EADQLAALRSLPDE----------- 293 Q D +L + L H E Q L SL + Sbjct: 314 HEEVQVDGETLSLHSALTHHYEITAANPQLVAQFAELAQSEKLTSLAQDKEALREYATRT 373 Query: 294 ----------------ELLAALPALPHRAYSIASLPADGALEL-----MVRLMHLPDGRA 332 +LL+ L L R YSIAS ++ E+ +V + + R Sbjct: 374 QVIDVLREEKVTLSAIQLLSLLRRLTPRLYSIASSQSEVGEEVHLTVGVVEYEYEGEQRL 433 Query: 333 GLGSGWLGLHAQPGQEIALRVRSNRSFHGPGDDR-PLILIGNGTGLAGLRAHLRERVAAG 391 G S +L + G + + V N +F P DD PLI++G GTG+A R+ ++ER G Sbjct: 434 GGASSFLAHQLEEGAPVKVFVEHNNNFKLPSDDNAPLIMVGPGTGIAPFRSFIQERENRG 493 Query: 392 QR-RNWLLFGERSRQHDFFHQQELQEWQAQGWLQRLDLAFSRDQAERVYVQDKLRAAADV 450 +NWLLFG+R+ DF +Q E Q++ G L RLD+AFSRDQ E+VYVQ +L A++ Sbjct: 494 AAGKNWLLFGDRTFTQDFLYQVEWQKYLKSGVLNRLDVAFSRDQHEKVYVQHRLLEQAEL 553 Query: 451 LRQWVEEGASLYVCGSLQGMAGGVALALQEIL----------GEDALQALAEQGRYRRDV 500 + QW++EGA YVCG MA V AL ++ E+ + L + RY+RDV Sbjct: 554 VWQWLQEGAYFYVCGDASRMAKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDV 613 Query: 501 Y 501 Y Sbjct: 614 Y 614 >BH0609 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Bha Bacillus halodurans Length = 607 Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 168/544 (30%), Positives = 239/544 (43%), Gaps = 91/544 (16%) Query: 46 QTVLVVFASQTGTAEQLAWQTAQSLRSGGLVVRVLPAGQLTDADLQATRLALFVASTTGE 105 + V ++F SQTG A+ LA ++L+ G V V L+ + L V ST GE Sbjct: 67 KEVTILFGSQTGNAQGLAENAGKTLKEQGFQVTVSSMSDFKPNQLKKLKNLLIVVSTHGE 126 Query: 106 GDAPDDASALARQLGSSDSTALPDLRFGVLALGDRSYQQYCAFGHALHAWLCRRHAQPLF 165 GD PD+A + L + L DLR+ VLALGD SY+ +C G L A L Sbjct: 127 GDPPDNALSFHEFLHGRRAPKLEDLRYSVLALGDTSYEFFCKTGKDFDQRLEALGATRLQ 186 Query: 166 DAIEVDNGDEGALRHWQHQLGVLS------GHSDEADWSAP-------AYGRWRLAGRRV 212 +E D E W GV++ G + A +AP Y R V Sbjct: 187 PCVECDLDFEEPAAKWLE--GVITRLSEGQGQTVPAQPTAPEAKAVETVYSRKNPFRAEV 244 Query: 213 L-----NPGSAGEPVFHLSLTPLDLPSPQWQAGDIAEIGPHNSGAAVNAFLQ-------- 259 L N + + HL L+ L+ ++ GD I P N V+ L Sbjct: 245 LENINLNGRGSNKETRHLELS-LEGSGLTYEPGDALGIFPENDPELVDLLLNELKWDANE 303 Query: 260 --AIGRQDD--SLRAAL----------------ATRLLPHE----------ADQLAAL-- 287 A+ +Q + L+ AL A LL +E A QL A Sbjct: 304 VVAVDKQGERLPLKEALTSYFEITVLTKKLIQQAAELLDNEKLRALTASENAQQLKAYID 363 Query: 288 -RSLPD------------EELLAALPALPHRAYSIASLPADGALEL-----MVRLMHLPD 329 R L D +E ++ L +P R YSIAS A E+ VR Sbjct: 364 GRDLVDFVRDFGPINASPQEFVSILRKMPPRLYSIASSIAANPEEVHLTIGAVRYHAHGR 423 Query: 330 GRAGLGSGWLGLHAQPGQEIALRVRSNRSFHGP-GDDRPLILIGNGTGLAGLRAHLRERV 388 R G+ S QPG + + ++ N++F P + P+I++G GTG+A R+ ++ER Sbjct: 424 DRKGVCSILCAERLQPGDTVPMFIQPNKNFKLPESPETPIIMVGPGTGVAPFRSFMQERE 483 Query: 389 AAGQR-RNWLLFGERSRQHDFFHQQELQEWQAQGWLQRLDLAFSRDQAERVYVQDKLRAA 447 AG ++W+ FG++ DF +Q E Q+W G L R+D+AFSRD E+VYVQ ++ Sbjct: 484 EAGATGKSWMFFGDQHFVTDFLYQTEWQKWLKDGVLTRMDVAFSRDTEEKVYVQHRMLEH 543 Query: 448 ADVLRQWVEEGASLYVCGSLQGMAGGVALALQEIL----------GEDALQALAEQGRYR 497 + L +W+EEGA YVCG MA V AL EI+ E L + +Q RY+ Sbjct: 544 SKELYKWLEEGAVFYVCGDKTNMAKDVQEALLEIIEKEGGKSREEAEAYLAEMKKQKRYQ 603 Query: 498 RDVY 501 RDVY Sbjct: 604 RDVY 607 >AGc238 [P] COG0369 Sulfite reductase, alpha subunit (flavoprotein) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 589 Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 167/541 (30%), Positives = 241/541 (44%), Gaps = 94/541 (17%) Query: 50 VVFASQTGTAEQLAWQTAQSLRSGGLVVRVLPAGQLTDADLQATRLALFVASTTGEGDAP 109 ++ +QTG AE LA A + R+ G+ V ++ L + + + V ST GEG+ P Sbjct: 54 ILVGTQTGNAEALAMDIAAAARTQGMQPVVTALDDVSMDSLGSMKRVIVVTSTYGEGEMP 113 Query: 110 DDASALARQLGSSDSTALPDLRFGVLALGDRSYQQYCAFGHALHAWLCRRHAQPLFDAIE 169 D+A L + + L ++ F VLALGD Y +C G + + + + I+ Sbjct: 114 DNAQLFWEALAADSAPRLDEMNFAVLALGDTGYDGFCQAGKLIDTRFEQLGGRRMKARID 173 Query: 170 VDNGDEGALRHWQHQ---LGVLSGHSDEADWSAP--------AYGRWRL---------AG 209 D E A W + L + EA + P A W Sbjct: 174 CDIDFEDAAAAWIGEALPLALAVDGGKEAAVTMPDIAAQPTRAKSGWSRKNPYPATVGVN 233 Query: 210 RRVLNPGSAGEP---VFHLSLTPLDLPSPQWQAGDIAEIGPHNSGAAVNAFLQAIGRQDD 266 RR+ GS+ E F L + LD ++AGD + P N+ A L G D Sbjct: 234 RRLSGSGSSKEIRHYEFDLRESGLD-----YEAGDALGVVPLNNPKLAGALLGHFGAVGD 288 Query: 267 SLRAAL----------------ATRLLPHEA------DQLAALRSLPDEELLAA------ 298 S A L +R L E ++L+ + + D+E LAA Sbjct: 289 SQVAGLDRPVGDALLNIYEISTPSRELVAEIGKRAGHEELSHILANGDKEQLAAFLWSKD 348 Query: 299 ---------------------LPALPHRAYSIASLP--ADGALELMV-RLMHLPDGR--A 332 L L HRAYSI+S P A ++ L + + + +GR Sbjct: 349 ILDLLNLGGKPLFELAEFVTFLKPLQHRAYSISSSPLLAKDSVHLTIASVRYRAEGRERG 408 Query: 333 GLGSGWLGLHAQPGQEIALRVRSNRSFHGPGDDR-PLILIGNGTGLAGLRAHLRERVAAG 391 G+ S +L + GQ + V N++F P DD P+I++G GTG+A RA L+ER A G Sbjct: 409 GVCSTYLADRVEAGQSAGIFVSPNKAFRVPQDDNAPVIMVGPGTGIAPFRAFLQERQARG 468 Query: 392 QR-RNWLLFGERSRQHDFFHQQELQEWQAQGWLQRLDLAFSRDQAERVYVQDKLRAAADV 450 R +NWL FG++ RQ DF ++ EL + G L RLDLAFSRDQAE++YVQ ++R Sbjct: 469 ARGKNWLFFGDQHRQSDFIYENELGDMSRDGVLTRLDLAFSRDQAEKIYVQTRMRQNGKA 528 Query: 451 LRQWVEEGASLYVCGSLQGMAGGVALALQEILGEDA----------LQALAEQGRYRRDV 500 L QW+EEG YVCG MA V AL I+ ++A + L + RY RDV Sbjct: 529 LYQWLEEGGYFYVCGDATRMAKDVDDALHSIISDEAGISAEAASDYVNRLKREKRYLRDV 588 Query: 501 Y 501 Y Sbjct: 589 Y 589