BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0340.p         (78 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2747 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Rso Ral...    95   3e-20
NMB0205 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Nme Nei...    86   3e-17
NMA0064 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins NmA Nei...    86   3e-17
PA4764 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Pae Pseu...    82   4e-16
YPO2634 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Ype Yer...    79   2e-15

>RSc2747 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Rso Ralstonia
          solanacearum
          Length = 143

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 57/64 (89%), Gaps = 1/64 (1%)

Query: 1  MPNNPSELKASGLKATLPRLKILEIFQNTSVRHLSAEDVYKQLLSDNLDVGLATVYRVLT 60
          MP+ P++LK  GLKAT+PRLKILEIFQ +  RH+SAEDVY+ LL++++D+GLATVYRVLT
Sbjct: 1  MPS-PADLKNIGLKATVPRLKILEIFQTSEERHMSAEDVYRILLAEHMDIGLATVYRVLT 59

Query: 61 QFEQ 64
          QFEQ
Sbjct: 60 QFEQ 63


>NMB0205 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Nme Neisseria
          meningitidis MC58
          Length = 144

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 2/68 (2%)

Query: 3  NNPSELKASGLKATLPRLKILEIFQNTSVRHLSAEDVYKQLLSDNLDVGLATVYRVLTQF 62
          NN ++LK SGLK T PRLKIL++F+  +  HLSAEDVY+ LL + +++G+AT+YRVLTQF
Sbjct: 5  NNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQF 64

Query: 63 EQRQPGIL 70
          E  Q GIL
Sbjct: 65 E--QAGIL 70


>NMA0064 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins NmA Neisseria
          meningitidis Z2491
          Length = 144

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 2/68 (2%)

Query: 3  NNPSELKASGLKATLPRLKILEIFQNTSVRHLSAEDVYKQLLSDNLDVGLATVYRVLTQF 62
          NN ++LK SGLK T PRLKIL++F+  +  HLSAEDVY+ LL + +++G+AT+YRVLTQF
Sbjct: 5  NNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRILLEEGVEIGVATIYRVLTQF 64

Query: 63 EQRQPGIL 70
          E  Q GIL
Sbjct: 65 E--QAGIL 70


>PA4764 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Pae Pseudomonas
          aeruginosa
          Length = 134

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 46/58 (79%)

Query: 6  SELKASGLKATLPRLKILEIFQNTSVRHLSAEDVYKQLLSDNLDVGLATVYRVLTQFE 63
          SEL+ +GLK TLPR+KIL++  +   RH+SAEDVYK L+    DVGLATVYRVLTQFE
Sbjct: 5  SELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE 62


>YPO2634 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins Ype Yersinia
          pestis
          Length = 148

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query: 1  MPNNPSELKASGLKATLPRLKILEIFQNTSVRHLSAEDVYKQLLSDNLDVGLATVYRVLT 60
          M +N   LK +GLK TLPRLKILE+ QN +  H+SAED+YK L+    ++GLATVYRVL 
Sbjct: 1  MTDNNKALKNAGLKVTLPRLKILEVLQNPACHHVSAEDLYKILIDIGEEIGLATVYRVLN 60

Query: 61 QFE 63
          QF+
Sbjct: 61 QFD 63