BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0332.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3217 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...   110   6e-25
RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...   100   2e-21
RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    93   2e-19
RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    92   4e-19
RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    84   9e-17

>RSc3217 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 90

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 65/87 (74%)

Query: 1  MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60
          MRGIIR+GD+TSHGG+V +G   S VMGRAVA  GD CSCP+ GH DC I EGD   ++ 
Sbjct: 4  MRGIIRVGDATSHGGRVESGAPASTVMGRAVARKGDRCSCPVQGHQDCTIAEGDAAFIVA 63

Query: 61 GKAVAFEGHKTSCGASLISSMESSGRT 87
          G+  AF+GH T+CGA LISS  +SG++
Sbjct: 64 GQPAAFDGHTTTCGAVLISSAPASGKS 90


>RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 1  MRGIIRLGDSTSHGGKVV-TGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLI 59
          MR IIRLGDST HGGKV+ T   +  V G  VA  GD CSCP  GH DCVI+EGD +  +
Sbjct: 1  MRQIIRLGDSTDHGGKVIQTAARQFKVDGVPVARKGDRCSCPREGHQDCVIIEGDEHFKV 60

Query: 60 DGKAVAFEGHKTSCGASLISSMESSGRT 87
          DG  VAFEGHKTSCGA LI+++ + G T
Sbjct: 61 DGVPVAFEGHKTSCGAMLIATVATFGTT 88


>RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 1  MRGIIRLGDSTSHGGKVV-TGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLI 59
          M  +IRLGD T HGG VV T      V G AVA  GD CSCP  GH DCVI+EGD +  +
Sbjct: 1  MPRVIRLGDPTEHGGAVVQTSAPNFKVNGVAVARKGDRCSCPRKGHQDCVIIEGDEHFKV 60

Query: 60 DGKAVAFEGHKTSCGASLISSMESSG 85
          DG  +AFEGHKTSCGA+L +++ S G
Sbjct: 61 DGVPIAFEGHKTSCGATLTATVASFG 86


>RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 1  MRGIIRLGDSTSHGGKVV-TGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLI 59
          M  IIRLGD T HGG VV T      V G AVA  GD CSCP  GH DCVI+EGD +  +
Sbjct: 1  MPRIIRLGDPTDHGGAVVQTSAPNFKVNGIAVARKGDRCSCPREGHQDCVIIEGDEHFKV 60

Query: 60 DGKAVAFEGHKTSCGASLISSMESSG 85
          DG  VAFEGH+TSCGA LI++ +  G
Sbjct: 61 DGVPVAFEGHRTSCGAVLIATADRFG 86


>RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 89

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 2  RGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGH-HDCVIVEGDPNVLID 60
          R  I LGD T HGG V+T    +   G+ +ACVGD  +CP SGH    VIV GDPNV+ID
Sbjct: 3  RPFILLGDKTDHGGVVITASGNTTTGGKGIACVGDKVTCPQSGHGGTTVIVTGDPNVVID 62

Query: 61 GKAVAFEGHKTSCGASLISSMESSG 85
          G+  A  G KT+CGA+L++S  ++G
Sbjct: 63 GRQAARHGDKTACGATLLASQGTTG 87