BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0288.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1188 [J] COG0251 Putative translation initiation inhibitor, y...   204   4e-53
SMb21157 [J] COG0251 Putative translation initiation inhibitor, ...   192   1e-49
SMb21139 [J] COG0251 Putative translation initiation inhibitor, ...   187   4e-48
AGl1839 [J] COG0251 Putative translation initiation inhibitor, y...   126   1e-29
AGpA326 [J] COG0251 Putative translation initiation inhibitor, y...   121   3e-28

>RSp1188 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Rso Ralstonia solanacearum
          Length = 128

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 114/127 (89%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           M+I R GVEGG+GTGGQHLPFARA  ADGWL+VSGQ PM  GEV+  GIV Q+H+ ++N+
Sbjct: 1   MTITRIGVEGGTGTGGQHLPFARAAGADGWLFVSGQTPMVGGEVVGHGIVEQTHQTLKNL 60

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           LAIL EAGYGPEHVVRCGVWLDD RDFPSFN+VFKEYFGANPPAR+CVVSSMV+DCKVEV
Sbjct: 61  LAILAEAGYGPEHVVRCGVWLDDPRDFPSFNRVFKEYFGANPPARSCVVSSMVIDCKVEV 120

Query: 121 DCVAFKR 127
           DCVA+++
Sbjct: 121 DCVAYRK 127


>SMb21157 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Sme Sinorhizobium meliloti
          Length = 129

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 109/126 (86%), Gaps = 1/126 (0%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           MSI+R+G E   G GG+ LPFARAV A GWL+VSGQV MENGE+I G IVAQ+HKAI N+
Sbjct: 1   MSIKRYGAEQ-VGAGGKTLPFARAVEAGGWLHVSGQVAMENGEIIGGNIVAQTHKAIGNL 59

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           LAILKEAGYG EHVVR GVWLDD RDF SFN+++++YFGA+PPARACV SSM+VDCKVE+
Sbjct: 60  LAILKEAGYGVEHVVRVGVWLDDPRDFWSFNRIYQDYFGAHPPARACVQSSMMVDCKVEI 119

Query: 121 DCVAFK 126
           DCVA+K
Sbjct: 120 DCVAYK 125


>SMb21139 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Sme Sinorhizobium meliloti
          Length = 127

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 106/126 (84%), Gaps = 1/126 (0%)

Query: 1   MSIQRFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNV 60
           M+I+R+G  G +G G QHLPFARAV A+GWLYVSGQV ME GE++ GGIVA+S KAI+N+
Sbjct: 1   MTIKRYGT-GETGAGKQHLPFARAVEANGWLYVSGQVAMEAGEIVGGGIVAESRKAIENM 59

Query: 61  LAILKEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEV 120
           +AIL EAGYG E VVR GVWLDD RDF +FN V+ +YFGANPPARACV S M+VDCKVEV
Sbjct: 60  IAILHEAGYGLEDVVRVGVWLDDPRDFWTFNGVYAQYFGANPPARACVQSRMMVDCKVEV 119

Query: 121 DCVAFK 126
           DCVA+K
Sbjct: 120 DCVAYK 125


>AGl1839 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 178

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 81/112 (72%)

Query: 15  GGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNVLAILKEAGYGPEHV 74
           GGQ  PFA+AV A  ++YVSGQVP  +GEV+ GGIVAQ+ + + N+  +L  AG     V
Sbjct: 64  GGQRRPFAKAVRAGDFVYVSGQVPTVDGEVVTGGIVAQTEQVVANIRDVLALAGCTLADV 123

Query: 75  VRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEVDCVAFK 126
           V+  VWLDDARDF SFN VF++YF  +PPAR+ V S ++VD KVE+D +A+K
Sbjct: 124 VKVNVWLDDARDFSSFNAVFQKYFIDHPPARSTVQSPLMVDAKVEMDVIAYK 175


>AGpA326 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 130

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%)

Query: 5   RFGVEGGSGTGGQHLPFARAVAADGWLYVSGQVPMENGEVIDGGIVAQSHKAIQNVLAIL 64
           R+ V   +  GGQ  PFA+AV A  ++YVSGQVP  +GE+I G IVAQ+ + I N++ +L
Sbjct: 8   RYAV-ADAQAGGQRRPFAKAVRAGDFVYVSGQVPTFDGEIIVGNIVAQTERVIANIIEVL 66

Query: 65  KEAGYGPEHVVRCGVWLDDARDFPSFNKVFKEYFGANPPARACVVSSMVVDCKVEVDCVA 124
             A      VV+   WLDDARDF SFN VF+++F  +PPAR+ V S M+VD KVE+D +A
Sbjct: 67  ALAECTLADVVKVNAWLDDARDFSSFNAVFQKHFIDHPPARSTVQSPMMVDVKVEMDVIA 126

Query: 125 FK 126
           +K
Sbjct: 127 YK 128