BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0261.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2053 [C] COG0839 NADH Rso Ralstonia solanacearum 230 2e-60 XF0314 [C] COG0839 NADH Xfa Xylella fastidiosa 9a5c 160 3e-39 NMA0006 [C] COG0839 NADH NmA Neisseria meningitidis Z2491 159 4e-39 NMB0253 [C] COG0839 NADH Nme Neisseria meningitidis MC58 157 2e-38 SMc01923 [C] COG0839 NADH Sme Sinorhizobium meliloti 153 2e-37 >RSc2053 [C] COG0839 NADH Rso Ralstonia solanacearum Length = 210 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 116/195 (59%), Positives = 152/195 (77%), Gaps = 2/195 (1%) Query: 3 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 62 ME T++FY F++++V++A++VITA+NPVHAALFLVLSFF+AA +WMLLKAEFLAI LVL Sbjct: 1 MEITTIIFYCFSLVLVLSALKVITAKNPVHAALFLVLSFFTAAAIWMLLKAEFLAITLVL 60 Query: 63 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYESQ 122 VYVGAVMVLFLFVVMM+D++++ LR FW Y P+ A +G +I++EMA VL +F Sbjct: 61 VYVGAVMVLFLFVVMMIDVDIEHLRRDFWTYVPMGAFVGAVIIMEMAVVLTKAFMGRSQP 120 Query: 123 VPAVSDTLG--QTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYFDPAQ 180 V + L T+ LGKLI+T+Y+YAFEVA +LL+AIVAAVALT R+RKDS + A Sbjct: 121 VQELPKALSGPNTQALGKLIYTDYIYAFEVAGAVLLLAIVAAVALTARRRKDSKAQNVAD 180 Query: 181 AVKVKASDRVRLVSM 195 ++V+ DRVRLVSM Sbjct: 181 QIRVQRKDRVRLVSM 195 >XF0314 [C] COG0839 NADH Xfa Xylella fastidiosa 9a5c Length = 222 Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 136/204 (66%), Gaps = 8/204 (3%) Query: 2 IMEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLV 61 +M++ + FY+F+ + V AA VI+ R+PV+A L L+L+FFS A +W+L+ AEFL + LV Sbjct: 1 MMDWVNIAFYLFSAVAVAAAGAVISVRHPVYAVLCLILTFFSMACIWLLVGAEFLGVTLV 60 Query: 62 LVYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYES 121 LVYVGAVMVLFLFVVMMLDI+ +LREG+ Y P+ + +++++M VL+ + Sbjct: 61 LVYVGAVMVLFLFVVMMLDIDTSRLREGWVRYLPVGLLVAGVMLVQM-VVLIGVKMRMAT 119 Query: 122 QVPAVSDTLGQTKPLGKL------IFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNY 175 P V + Q L +FT++++ FE AAVIL VA++AAV LTLRKR+ Sbjct: 120 PFP-VDNAAAQAAHTSNLTWLAHSLFTDFLFPFEFAAVILTVAVIAAVMLTLRKREGVKT 178 Query: 176 FDPAQAVKVKASDRVRLVSMKAES 199 DP+Q +VKA+DR+R+VSM E Sbjct: 179 QDPSQQTRVKAADRLRIVSMPTEE 202 >NMA0006 [C] COG0839 NADH NmA Neisseria meningitidis Z2491 Length = 223 Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 152/221 (68%), Gaps = 11/221 (4%) Query: 3 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 62 M F+ +LFY+FAV+++ A++ +TA+NPVHAAL LVL+F +A LWML++AEFL + LV+ Sbjct: 1 MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 63 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLN------SF 116 VYVGAVMVLFLFVVMML+I+++++R GFW + P+A +G ++ + + +L+N +F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 117 WVYESQVPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYF 176 + + +PA + + + LG I+T+Y+ FE+AAV+LL+ +VAA+AL RK + Sbjct: 121 GLMKD-IPADYNNI---RDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRM 176 Query: 177 DPAQAVKVKASD-RVRLVSMKAESTRNAPAADAAAAAADKP 216 DPA VKV+A R+RLV M+A + A ++ + KP Sbjct: 177 DPADQVKVRADQGRMRLVKMEAVKPQTESAEESEVSDDLKP 217 >NMB0253 [C] COG0839 NADH Nme Neisseria meningitidis MC58 Length = 223 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 152/221 (68%), Gaps = 11/221 (4%) Query: 3 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 62 M F+ +LFY+FAV+++ A++ +TA+NPVHAAL LVL+F +A LWML++AEFL + LV+ Sbjct: 1 MTFQLILFYIFAVIILYGALKTVTAKNPVHAALHLVLTFCVSAMLWMLMQAEFLGVTLVV 60 Query: 63 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLN------SF 116 VYVGAVMVLFLFVVMML+I+++++R GFW + P+A +G ++ + + +L+N +F Sbjct: 61 VYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLLAVALILILVNPKTDLAAF 120 Query: 117 WVYESQVPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYF 176 + + +PA + + + LG I+T+Y+ FE+AAV+LL+ +VAA+AL RK + Sbjct: 121 GLMKD-IPADYNNI---RDLGSRIYTDYLLPFELAAVLLLLGMVAAIALVHRKTVNPKRM 176 Query: 177 DPAQAVKVKASD-RVRLVSMKAESTRNAPAADAAAAAADKP 216 DPA VKV+A R+RLV M+A + A ++ + KP Sbjct: 177 DPADQVKVRADQGRMRLVKMEAVKPQVESAEESEVSDDLKP 217 >SMc01923 [C] COG0839 NADH Sme Sinorhizobium meliloti Length = 204 Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/200 (44%), Positives = 130/200 (65%), Gaps = 7/200 (3%) Query: 3 MEFKTVLFYVFAVLVVIAAVRVITARNPVHAALFLVLSFFSAAGLWMLLKAEFLAIVLVL 62 M + + FY+FA + V +A VI ARNPV++ LFL+L+FF+AAGL++L AEFLA++L++ Sbjct: 1 MGLQALFFYLFAFIAVASAFMVIAARNPVYSVLFLILTFFNAAGLFLLTGAEFLAMILLV 60 Query: 63 VYVGAVMVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLNSFWVYE-- 120 VYVGAV VLFLFVVMMLDI+ +LR G Y P+ A IG+I+ E+ V+ S + E Sbjct: 61 VYVGAVAVLFLFVVMMLDIDFTELRAGVLEYAPIGALIGLILAAELIVVVGGSAFSPEIA 120 Query: 121 ----SQVPAVSDTLGQTKPLGKLIFTEYVYAFEVAAVILLVAIVAAVALTLRKRKDSNYF 176 +PA S+ T LG +++T YVY F++A ++LLVA++ A+ LTLR R++ Sbjct: 121 KGIAMPIPAPSERT-NTAALGDVLYTHYVYFFQIAGLVLLVAMIGAIVLTLRHRQNIKRQ 179 Query: 177 DPAQAVKVKASDRVRLVSMK 196 Q V V +V++K Sbjct: 180 SIPQQVARTPETAVEVVTVK 199