BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0248.p (356 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 261 2e-69 DR1034 [E] COG0410 ABC-type branched-chain amino acid transport ... 259 6e-69 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 249 5e-66 DR2118 [E] COG0410 ABC-type branched-chain amino acid transport ... 246 6e-65 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 246 8e-65 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 131/237 (55%), Positives = 169/237 (71%), Gaps = 4/237 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L I L YG ++ L I++ + KG+VVTLIG+NGAGK+TT+RAIS ++ PK G++ Sbjct: 32 ILEIQELDVNYGGIQALKKINLTIQKGEVVTLIGANGAGKSTTLRAISKIVTPKNGQIIY 91 Query: 61 GGKNITGLDSHRIARYGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 G+NIT H + ++G+AH PEGRRV A +V DNLLLGA+ R + K DI ++ Sbjct: 92 SGRNITRRLPHEVVKFGIAHCPEGRRVLAKQTVLDNLLLGAYIRSNQTEIKADI----KQ 147 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 ELFPRL +RQ QLAGTLSGGEQQMLA+ARA+M P+++LLDEPS+GLAP +V E+F I Sbjct: 148 QFELFPRLAQRQNQLAGTLSGGEQQMLAIARALMSRPQLLLLDEPSLGLAPAIVREIFSI 207 Query: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 I L+ GVT+LLVEQ A AL +AD GYVLE G I++ G A L ND VK AYLG Sbjct: 208 IENLRATGVTILLVEQNANLALQIADRGYVLEAGSITLSGAASNLINDERVKKAYLG 264 >DR1034 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 252 Score = 259 bits (662), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 175/238 (73%), Gaps = 5/238 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L + N+H+ YG++E L G++M V +G++V LIG NGAGKTTT+R ISGM+KPK G VT Sbjct: 17 VLELQNVHSYYGQIEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKPKTGSVTY 76 Query: 61 GGKNITGLDSHRIARYGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 G+N+TG+ SH++ G+AH PEGRR+F M+V +NL +GA+ K I +E Sbjct: 77 LGQNVTGVPSHQLIGRGMAHVPEGRRIFPQMTVRENLEVGAYT----VNDKAAINARIEE 132 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 ELFPRL+ER++QL GT+SGGEQQMLA+ARA+M+ P+V+LLDEPSMGL+P+ V+ +F I Sbjct: 133 GFELFPRLRERESQLGGTMSGGEQQMLAIARALMIAPKVLLLDEPSMGLSPLFVENIFSI 192 Query: 181 IVRL-KEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 I RL KE+G T+LLVEQ A+ AL +AD YVL+ G+I + G A + D V+ AYLG Sbjct: 193 IERLNKERGTTILLVEQNASMALAIADRAYVLQTGEIKLSGNAQDIARDETVRKAYLG 250 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 249 bits (637), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/237 (51%), Positives = 171/237 (72%), Gaps = 4/237 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L + +LH YG + + GI + VP+G++VTLIG+NGAGKTTT+ AI+G+++ + G++ Sbjct: 5 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 64 Query: 61 GGKNITGLDSHRIARYGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 G++IT +H I R G+A PEGRR+F ++V +NL++GA+ R + K I DLE Sbjct: 65 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEW 120 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 LFPRLKER QL GTLSGGEQQMLA+ RA+M P+++++DEPS+GLAPILV EVF + Sbjct: 121 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 180 Query: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 I ++ ++G T+LLVEQ A AL VA YGYVLE G+I + G A +L ++ V+ AYLG Sbjct: 181 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLG 237 >DR2118 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 236 Score = 246 bits (628), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 127/238 (53%), Positives = 171/238 (71%), Gaps = 4/238 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L I NL YG ++ + G+S++V +G+VVTLIG+NGAGKTTT+RA+S M++P G + Sbjct: 3 LLEIENLGVNYGAIQAVRGLSLEVQEGEVVTLIGANGAGKTTTLRAVSRMVRPVAGIIRF 62 Query: 61 GGKNITGLDSHRIARYGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 GG++IT + + G+A SPEGR+V A S+ DNL LGA+ R RA I DL+R Sbjct: 63 GGRDITRIPPDEAVKIGIAQSPEGRQVLARQSIQDNLELGAYVRSDRA----GIQADLQR 118 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 + FPRL ER+TQLAGTLSGGEQQMLA+ARA+M P+++LLDEPS+GLAP++V E+F I Sbjct: 119 MYDRFPRLGERRTQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPLIVREIFTI 178 Query: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 I L EQG+T+LLVEQ A A+N + YVLE G+++ G + +L ND V AYLGG Sbjct: 179 IRELNEQGMTILLVEQNAKLAMNASHRTYVLEAGQLTFSGVSSELVNDERVLHAYLGG 236 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 246 bits (627), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 166/238 (69%), Gaps = 3/238 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 ML + +L Y ++ L GIS+++ +G+VV++IG+NGAGKTTT++ ISG+I PK G + Sbjct: 3 MLEVKDLQVFYDNIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSIIF 62 Query: 61 GGKNITGLDSHRIARYGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 GKN+ +H I + G+A PEGRR+F+ ++V DNL LG F A K D Sbjct: 63 EGKNLLKEKAHNICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTVKDSAEKK---EEDRAN 119 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 ++FPR+ ER+ QLAGTLSGGEQQMLAM RA+M P++++LDEPSMGL+P+ V E+F + Sbjct: 120 FYKVFPRMSERKNQLAGTLSGGEQQMLAMGRALMSRPKLLILDEPSMGLSPLFVKEIFEV 179 Query: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 I +LKE+G T+LLVEQ A AL+++D YV+E G+I + G A+ L + VK AYLGG Sbjct: 180 IKQLKEKGTTILLVEQNAKMALSISDRAYVIETGEIVLEGKAEDLLYNDRVKKAYLGG 237