BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0230.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2792 Non COG                                                       174   5e-44
PA1053 [M] COG3133 Outer membrane lipoprotein Pae Pseudomonas ae...    82   3e-16
HI1579 [M] COG3133 Outer membrane lipoprotein Hin Haemophilus in...    62   5e-10
STM1445 [M] COG3133 Outer membrane lipoprotein Sty Salmonella ty...    58   6e-09
PM0554 [M] COG3133 Outer membrane lipoprotein Pmu Pasteurella mu...    58   6e-09

>RSc2792 Non COG
          Length = 155

 Score =  174 bits (442), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 5   IVIAALGSLVAGCAVTPNSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSGVGTLGGA 64
           +++ ALG  + GCA   NS S Y + QAQ EQTVR G VES+RNV ID+  +GVGTL G 
Sbjct: 12  LLVTALG--LQGCATGSNSNSAYTSYQAQREQTVRFGTVESVRNVVIDREQTGVGTLAGG 69

Query: 65  ALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDNGELRAIT 124
           A+GGI + + IG GNG++AAGI+GA+AGG+ G+  E  +N RPGLEITV+LDNGE RAIT
Sbjct: 70  AVGGIGSAAAIGRGNGSVAAGILGAIAGGIAGSAIEGQVNKRPGLEITVKLDNGEYRAIT 129

Query: 125 QDADEPFRIGERVRLLSNGRTTRVTH 150
           Q+ADE FR GERVRLLS+G  TRVTH
Sbjct: 130 QEADEAFRPGERVRLLSSGGVTRVTH 155


>PA1053 [M] COG3133 Outer membrane lipoprotein Pae Pseudomonas aeruginosa
          Length = 154

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 7/154 (4%)

Query: 2   KKLIVIAALGSL---VAGCAVTPNSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSGV 58
           K  +++A+  ++   + GC  +  +   Y+  +A+  QTVRMG ++++R V I+   + +
Sbjct: 3   KSALIVASFTAMALALGGCQ-SSLTGDTYSREEARTVQTVRMGTIQALRPVKIEGTKTPI 61

Query: 59  GTLGGAALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDNG 118
           G++ GA +GG+A  +  GGG G+  A I+GA+AGG+LG   E  L    G+EITVR D+G
Sbjct: 62  GSIAGAGVGGVAGSAV-GGGKGSYVAAIIGAVAGGLLGAATEEGLTRTQGVEITVREDDG 120

Query: 119 ELRAITQDAD--EPFRIGERVRLLSNGRTTRVTH 150
             RA  Q  D  + FR+GERVR+L+   T+RV H
Sbjct: 121 STRAYVQQVDQGQIFRVGERVRILTVNGTSRVAH 154


>HI1579 [M] COG3133 Outer membrane lipoprotein Hin Haemophilus influenzae
          Length = 155

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 14  VAGCAVTP-NSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSGVGTLGGAALGGIAAG 72
           V GCA T   S  VY+  QA+  +++  G + S+R V I   + GV    G    G  AG
Sbjct: 16  VTGCANTDIFSGDVYSASQAKEARSITYGTIVSVRPVKIQADNQGVVGTLGGGALGGIAG 75

Query: 73  SNIGGGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDNGELRAITQDADEPF 131
           S IGGG G   A +VGA+ G + G++ E  ++   G E+ ++ D+G+   + Q AD  F
Sbjct: 76  STIGGGRGQAIAAVVGAIGGAIAGSKIEEKMSQVNGAELVIKKDDGQEIVVVQKADSSF 134


>STM1445 [M] COG3133 Outer membrane lipoprotein Sty Salmonella typhimurium
           LT2
          Length = 155

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 1   MKKLIVIAALGSLVAGCAVTPN-SASVYNTRQAQGEQTVRMGVVESIRNVTIDKG--SSG 57
           +K+++ ++ +G  +AGC    + S  VY   +A+  Q V  G + ++R V I  G  S+ 
Sbjct: 2   IKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNV 61

Query: 58  VGTLGGAALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDN 117
           +G +GGA LGG   G+ IGGG G   A   GA+AGGV G   ++ +N   G+E+ +R D+
Sbjct: 62  IGAIGGAVLGGF-LGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD 120

Query: 118 GE-LRAITQDADEPFRIGERVRLLSNGRTTRVT 149
           G  +  + +  +  F  G+RV L SNG    V+
Sbjct: 121 GNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVS 153


>PM0554 [M] COG3133 Outer membrane lipoprotein Pmu Pasteurella multocida
          Length = 154

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 1   MKKLIV-IAALGSL-VAGCAVTP-NSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSG 57
           MKK+   +A L SL +AGCA T   S +VY   QA+  +++  G + S R V I   S G
Sbjct: 1   MKKVTFALAILMSLGLAGCANTDIYSGNVYEGNQAKEVRSISYGTIVSSRPVKIQADSQG 60

Query: 58  VGTLGGAALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLNNRPGLEITVRLDN 117
           V    G    G   GS IGGG G + A  VGA+AG V+G +AE  LN    LE+ ++ DN
Sbjct: 61  VLGGFGGGALGGIVGSGIGGGTGQMIATTVGAIAGAVIGAKAEEKLNQVDSLELVIKKDN 120

Query: 118 GELRAITQDADEPFRIGERVRLL 140
           G+   + Q  D+    G RVR++
Sbjct: 121 GQEIVVVQKYDQSLVPGARVRIV 143