BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0220.p         (281 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2902 [ET] COG0834 ABC-type amino acid transport/signal transdu...    89   9e-18
PA5270 [ET] COG0834 ABC-type amino acid transport/signal transdu...    82   1e-15

>PA2902 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Pae Pseudomonas
           aeruginosa
          Length = 282

 Score = 89.4 bits (220), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 8/238 (3%)

Query: 25  VTALSAP-LTVHAAECSKVVISADSDYAPLHW---YDGKRLTGASIEIATRALSALNIPY 80
           + AL  P L   A  C ++V + + +Y P  W    D KRL GA+ ++  R    L +  
Sbjct: 15  LAALFVPGLAAAAGSCERLVATGNPEYPPYLWRDPQDPKRLIGANADLLQRLGKELGVRI 74

Query: 81  EVRYVGPFHRVLKEAESGQVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKRFAY 140
           +V Y G + +  +E  SG+  +++    T  R   + +   P       V+V +D  F +
Sbjct: 75  DVLYSGSWEKAQEEVTSGRADLLAGAYLTLARLGSMDYMHPPFLMTSGVVWVNKDAAFPF 134

Query: 141 GGWKDLIGKRGAVTLGNQFGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITGYYN 200
            G  DLIG +G+V  G+  G  FD F + +L ++           L   R ++L+     
Sbjct: 135 IGRDDLIGHKGSVLAGSSLGEEFDRFAKASLDLKPVPSLTQGLQDLMLKRSEFLLYQALP 194

Query: 201 GVIYLNQNGLADRFMPLRPFVSESDNYIAMSRASPCVKLLPRINAQLEAMQKSGELRA 258
           G   +   G+AD    L P +S    Y+ +S  S C    P +  QL   +K  EL A
Sbjct: 195 GQAQVEALGMADDLEALEPVLSSEGLYLTLSHNSACND--PWLRGQLA--KKMTELSA 248


>PA5270 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Pae Pseudomonas
           aeruginosa
          Length = 293

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 10/245 (4%)

Query: 22  LAAVTALSAPLTVHAAECSKVVISADSDYAPLHWYDGKRLTGASIEIATRALSALNIPYE 81
           +  + ALS P    A     +V+ A+ D+ P   Y   R+ G S +I   A  A + P +
Sbjct: 48  ICLLLALSGPAA--AVPTEPLVLGAEDDWYPYTAYKDGRIQGMSADIVRAAFRAADTPVQ 105

Query: 82  VRYVGPFHRVLKEAESGQVAMVSSLKNTPERQSYLAFASVPLFSNPIAVFVARDKRFAYG 141
           +    P+ R +K A  G +A   +    P   +       PLF   I ++  RD+     
Sbjct: 106 LNPY-PYSRCMKLALKGLIAGCFNTSPNPHILADYRLPRHPLFRAEIQLWARRDEARPVN 164

Query: 142 GWKDLIGKRGAVTLGNQFGGGFDEFLRDNLIIETAQKFYMNFSKLDSGRIDYLITGYYNG 201
             + L G++ AVTLG ++G GFD   R +L+    +K Y  F  L  GR+DY +  Y N 
Sbjct: 165 AEQALSGRKVAVTLGYEYGDGFDR--RHDLVRIPVRKDYYGFLMLQRGRVDYAL-AYRNT 221

Query: 202 V--IYLNQNGLADRFMPLRPFVSESDNYIAMSRASPCVK-LLPRINAQLEAMQKSGELRA 258
              ++     L  +F P+   V   + Y++ SR  P  + LL R +  ++ +  SGE + 
Sbjct: 222 ARQLFSEHPELEGQFQPVA-TVHRPELYLSFSRRHPQAEHLLERFDLGMQRILASGEYQK 280

Query: 259 VLQSF 263
           +L  +
Sbjct: 281 ILDGW 285