BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0210.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2306 [E] COG1280 Putative threonine efflux protein Pae Pseudom...   124   8e-29
SMc01425 [E] COG1280 Putative threonine efflux protein Sme Sinor...   115   2e-26
mll1430 [E] COG1280 Putative threonine efflux protein Mlo Mesorh...   114   5e-26
VC1712 [E] COG1280 Putative threonine efflux protein Vch Vibrio ...   107   1e-23
YPO0181 [E] COG1280 Putative threonine efflux protein Ype Yersin...    96   2e-20

>PA2306 [E] COG1280 Putative threonine efflux protein Pae Pseudomonas
           aeruginosa
          Length = 205

 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 2   IEALLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHVLGITFGFGVLLAVCAFGIG 61
           ++ LL    FAFV+S+TPGPNN ML +SG+ FGF RS+PH+LGI+ GF +++    FG+G
Sbjct: 5   VDLLLAFSLFAFVTSVTPGPNNTMLLASGVNFGFVRSIPHILGISCGFFIMVMAVGFGLG 64

Query: 62  ELVVALPQVVLLLKALGCAYLLYLAWQLRRMAVSGAG-ERAVRPMSFWAAAMFQFANPKA 120
            +  A P +  +L+ +G AYLLYLAW++     +G   E   +P+S+W AA FQ+ NPKA
Sbjct: 65  TVFEAYPVLYTILRYVGAAYLLYLAWKIATSGPAGNDPEGRGKPLSYWGAAAFQWVNPKA 124

Query: 121 WVMA 124
           WVMA
Sbjct: 125 WVMA 128


>SMc01425 [E] COG1280 Putative threonine efflux protein Sme Sinorhizobium
           meliloti
          Length = 197

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 82/125 (65%)

Query: 2   IEALLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHVLGITFGFGVLLAVCAFGIG 61
           ++ LL L  FAF +SITPGPNN+ML +SG+ FGF R++PH+LGI  GF VLL     G+G
Sbjct: 3   LDTLLALFLFAFTTSITPGPNNMMLFASGVNFGFVRTIPHMLGIGIGFFVLLIAVGLGLG 62

Query: 62  ELVVALPQVVLLLKALGCAYLLYLAWQLRRMAVSGAGERAVRPMSFWAAAMFQFANPKAW 121
            L+ ++P +   LK  G AYL+++AW++      G G     PM+F  AA FQ+ NPKAW
Sbjct: 63  ALLHSVPLLYTALKFAGGAYLVWIAWKIGTSRSLGEGRANAVPMTFLQAAAFQWVNPKAW 122

Query: 122 VMAXD 126
           VMA  
Sbjct: 123 VMAVS 127


>mll1430 [E] COG1280 Putative threonine efflux protein Mlo Mesorhizobium
           loti
          Length = 198

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 2   IEALLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHVLGITFGFGVLLAVCAFGIG 61
           ++A L L+ +AFV+SITPGPNN+ML +SG+ FG  R++PH+LGI+ GF VLL     G+G
Sbjct: 3   LDAFLALLVYAFVTSITPGPNNLMLLASGVNFGIARTVPHMLGISMGFLVLLLAVGLGLG 62

Query: 62  ELVVALPQVVLLLKALGCAYLLYLAWQLR-RMAVSGAGERAVRPMSFWAAAMFQFANPKA 120
            ++ A P +   LK  G AYLLYLAW++    +++G GE   RPM F  AA FQ+ NPKA
Sbjct: 63  AVLTAFPALHTALKIAGGAYLLYLAWKIAMSRSLTGKGETKARPMRFIDAAAFQWVNPKA 122

Query: 121 WVMA 124
           WVMA
Sbjct: 123 WVMA 126


>VC1712 [E] COG1280 Putative threonine efflux protein Vch Vibrio cholerae
          Length = 204

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 7   PLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHVLGITFGFGVLLAVCAFGIGELVVA 66
           PL++FAFVS+ +PGPNNIML +SG   GF R++PH+LGITFGF +++ +   G+ EL   
Sbjct: 18  PLLAFAFVSTFSPGPNNIMLMTSGANVGFLRTIPHMLGITFGFSIMVLLVGVGLTELFQR 77

Query: 67  LPQVVLLLKALGCAYLLYLAWQLRRMAVSGAGERAVRPMSFWAAAMFQFANPKAWVMA 124
            P +   L+ L   YL+YLA ++     S  G+   +PMSF AAA+FQ+ NPK W MA
Sbjct: 78  YPILQQGLQILCTLYLVYLAVKIALSRPSKEGQE-YQPMSFVAAALFQWVNPKGWSMA 134


>YPO0181 [E] COG1280 Putative threonine efflux protein Ype Yersinia pestis
          Length = 200

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 2/120 (1%)

Query: 6   LPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHVLGITFGFGVLLAVCAFGIGELVV 65
           L ++ F +V++ITPGPNN++LTS+G  FGF RS+  +LGI  G   +L + AFG+G L++
Sbjct: 7   LSMVGFLWVAAITPGPNNMLLTSTGANFGFMRSIWLMLGIMLGMQSMLLLVAFGVGSLIL 66

Query: 66  ALPQVVLLLKALGCAYLLYLAWQLRRMAVSGAGERA--VRPMSFWAAAMFQFANPKAWVM 123
             P + L LK LG  YLL+LAW++   A           +P+  +   + QF NPKAW+M
Sbjct: 67  IYPSLHLALKILGSLYLLWLAWKIATSAYEKLDTNVAPAKPLRLYQGWLLQFLNPKAWLM 126