BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0206.p (398 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0985 [KE] COG1167 Transcriptional regulators containing a DNA... 466 e-131 DR1588 [KE] COG1167 Transcriptional regulators containing a DNA-... 347 4e-95 PAB2227 [KE] COG1167 Transcriptional regulators containing a DNA... 339 7e-93 PH0207 [KE] COG1167 Transcriptional regulators containing a DNA-... 331 2e-90 AGc3654 [KE] COG1167 Transcriptional regulators containing a DNA... 319 7e-87 >RSc0985 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 406 Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/397 (57%), Positives = 291/397 (73%), Gaps = 10/397 (2%) Query: 3 LENPAPLQWQFSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRV 62 +++PA FS+RA+ + SSAIREILK+T RP++ SFAGGLPSP+TFPVE ++ A R+ Sbjct: 11 MDHPA---CTFSRRAQQLTSSAIREILKITERPEVISFAGGLPSPVTFPVEAIQAACARM 67 Query: 63 LSQQGKMALQYGPTDGYLPLREWIAASLSTDGAQITAEQVLMVSGSQQGLDLLGKVMIDE 122 + + +LQY PT+G LREWIA T TA +VL+ +GSQQGLDLLGK+ ID Sbjct: 68 FADNPQASLQYTPTEGLSMLREWIAQRHGT-----TASRVLITTGSQQGLDLLGKIFIDP 122 Query: 123 GSKVLVETPSYLGALQAFSLYGAKFESVPSDEFGLQPETIE-AIAGGARMLYSLPNFQNP 181 SKVLVETP+YLGALQAFSL+ + SVP+DE GL PE + + GAR Y++PNFQNP Sbjct: 123 QSKVLVETPTYLGALQAFSLFEPSYASVPTDERGLLPEALTPELTAGARFFYTIPNFQNP 182 Query: 182 TGRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSGVIYMGSFSKV 241 TGR LP ERR LV LG+ L+EDDPYG LSY LP + S+NP GV+YMGSFSK+ Sbjct: 183 TGRRLPLERRQALVARAKELGVLLVEDDPYGELSYTGDALPSLRSLNPDGVVYMGSFSKI 242 Query: 242 LTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYG 301 L PG+RLGY++AP P+ K+ QAKQA+DLHT TQ V YE +K G LD H+P+IR LYG Sbjct: 243 LAPGMRLGYIIAPEPIHFKLVQAKQASDLHTPSFTQRVAYEVLKTGLLDTHIPSIRTLYG 302 Query: 302 DQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHLDASALLNEAVEQEKVAFVPGAPF 361 QC+ MLDAL ++ PA W++PEGGMFIWV +PE +D ALL +AV + VAFVPGAPF Sbjct: 303 KQCETMLDALTRHMPAGVHWNRPEGGMFIWVEVPEGIDTMALLEKAVAR-NVAFVPGAPF 361 Query: 362 YANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIASKL 398 YAN ++NT+RL+FVTV PE+I G+ LG+LI +++ Sbjct: 362 YANAPRRNTMRLAFVTVSPERIEQGITVLGELIRAEI 398 >DR1588 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Dra Deinococcus radiodurans Length = 420 Score = 347 bits (889), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 185/394 (46%), Positives = 256/394 (64%), Gaps = 23/394 (5%) Query: 13 FSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQ 72 S+RA+ M +SAIREILK+T +PD+ SFAGGLP+P FP++ ++ A + LS+ G ALQ Sbjct: 27 ISRRAQTMTASAIREILKITQQPDVISFAGGLPAPELFPLDAVRQAAETALSKYGPAALQ 86 Query: 73 YGPTDGYLPLREWIAASLSTDGAQITAEQVLMVSGSQQGLDLLGKVMIDEGSKVLVETPS 132 Y T+G+LPLREWIA I A V +V+GSQQGLDLLGK++IDEG VLVE P+ Sbjct: 87 YSTTEGHLPLREWIAGRHG-----IPAANVQIVTGSQQGLDLLGKILIDEGDLVLVEAPT 141 Query: 133 YLGALQAFSLYGAKFESVPSDEFGLQPETIEAIAGGA-------RMLYSLPNFQNPTGRT 185 YLGALQ+F Y ++ +P+DE G+ + + + G ++LY++PNFQNPTGRT Sbjct: 142 YLGALQSFQPYLPRYAEMPTDEGGIDVDALATLLAGLAAQGEKPKLLYAIPNFQNPTGRT 201 Query: 186 LPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSM--------NPSGVIYMGS 237 L ERR +LVE A+ G+ +IEDDPYG L + LP + + + + VIY S Sbjct: 202 LSLERRRRLVELTAQYGVLVIEDDPYGQLRFSGEALPSLYEIGLELAGDVDRNHVIYSSS 261 Query: 238 FSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIR 297 FSK L PG+R +V A P+I K+ QAKQ DLHT L QM++ E + L + T++ Sbjct: 262 FSKTLVPGLRDAWVEAAAPVITKLIQAKQGADLHTPTLNQMMITELLP--LLPAQIETVK 319 Query: 298 KLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHLDASALLNEAVEQEKVAFVP 357 Y ++ ML + ++FPA ++++P+GGMF+WVTLPE +D ALL AVE KVA+VP Sbjct: 320 AAYRERGAHMLSQMDEFFPAGVTYTRPQGGMFLWVTLPEGVDTVALLPRAVEN-KVAYVP 378 Query: 358 GAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLG 391 G PF+A NT+R+S+ + PEQI G+ LG Sbjct: 379 GQPFFALGGGANTMRMSYSSATPEQITQGMRALG 412 >PAB2227 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pab Pyrococcus abyssi Length = 410 Score = 339 bits (869), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 173/390 (44%), Positives = 250/390 (64%), Gaps = 9/390 (2%) Query: 13 FSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQ 72 FS++A MK+S +RE+LK+ DI S AGGLP+P TFP E +K ++ + ALQ Sbjct: 16 FSKKAMEMKASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIKEILIEIMEEHADKALQ 75 Query: 73 YGPTDGYLPLREWIAASLSTDGAQITAEQVLMVSGSQQGLDLLGKVMIDEGSKVLVETPS 132 YG T G+ PLRE + L +++ SGSQQ LDL+G+V ID G V+VE P+ Sbjct: 76 YGTTKGFTPLRETLLDWLEKRYGISKENDIMITSGSQQALDLIGRVFIDPGDIVIVEAPT 135 Query: 133 YLGALQAFSLYGAKFESVPSDEFGLQPETIE-------AIAGGARMLYSLPNFQNPTGRT 185 YL ALQAF+ Y K+ VP D+ G+ E +E A +++Y++P FQNP G T Sbjct: 136 YLAALQAFNFYEPKYIQVPLDDNGMNVEALEDELRKLKAEGKKVKIVYTVPTFQNPAGVT 195 Query: 186 LPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSG-VIYMGSFSKVLTP 244 + ERR L+E + L +IEDDPYG L Y P K+ +++ G VIY+G+FSK+L P Sbjct: 196 MSEERRKHLIELASEYDLIVIEDDPYGELRYSGKPKKKIKALDKEGRVIYLGTFSKILAP 255 Query: 245 GIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQC 304 G R+G++V +I K+E AKQ+TDL T Q+V ++ + +G LD+H+P IR+ Y + Sbjct: 256 GFRIGWIVGDPGIIRKLEIAKQSTDLCTNVFGQVVAWKYVSEGHLDRHIPKIREFYKPRR 315 Query: 305 QAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHLDASALLNEAVEQEKVAFVPGAPFYAN 364 AML+AL+++ P + W+KPEGGMF+WVTLP+ +D+ +L +AV ++ VA+VPG FYA Sbjct: 316 DAMLEALEEFMPENVKWTKPEGGMFVWVTLPDGIDSKKMLEKAV-KKGVAYVPGEAFYAY 374 Query: 365 VAQKNTLRLSFVTVPPEQIRAGVERLGKLI 394 KNT+RL+F V ++IR GV+RL + I Sbjct: 375 RDVKNTMRLNFTYVDEDKIREGVKRLAETI 404 >PH0207 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pho Pyrococcus horikoshii Length = 428 Score = 331 bits (849), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 163/394 (41%), Positives = 249/394 (63%), Gaps = 9/394 (2%) Query: 13 FSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQ 72 FS++A M++S +RE+LK+ DI S AGGLP+P TFP E ++ ++ + ALQ Sbjct: 34 FSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQ 93 Query: 73 YGPTDGYLPLREWIAASLSTDGAQITAEQVLMVSGSQQGLDLLGKVMIDEGSKVLVETPS 132 YG T G+ PLRE + L +++ SGSQQ LDL+G+V ++ G V+VE P+ Sbjct: 94 YGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPT 153 Query: 133 YLGALQAFSLYGAKFESVPSDEFGLQPETIE-------AIAGGARMLYSLPNFQNPTGRT 185 YL ALQAF+ Y ++ +P D+ G++ E +E + +++Y++P FQNP G T Sbjct: 154 YLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT 213 Query: 186 LPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSG-VIYMGSFSKVLTP 244 + +RR L+E + ++EDDPYG L Y P K+ +++ G VIY+G+FSK+L P Sbjct: 214 MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAP 273 Query: 245 GIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQC 304 G R+G++V +I KME AKQ+TDL T Q+V + + G+L++H+P IRK Y + Sbjct: 274 GFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRR 333 Query: 305 QAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHLDASALLNEAVEQEKVAFVPGAPFYAN 364 AML+AL+++ P W+KPEGGMFIWVTLP+ +D+ +L A+ ++ VA+VPG FYA+ Sbjct: 334 DAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAI-KKGVAYVPGEAFYAH 392 Query: 365 VAQKNTLRLSFVTVPPEQIRAGVERLGKLIASKL 398 KNT+RL+F V ++I G++RL + I +L Sbjct: 393 RDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL 426 >AGc3654 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 414 Score = 319 bits (817), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 169/402 (42%), Positives = 240/402 (59%), Gaps = 15/402 (3%) Query: 9 LQWQ--FSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRVLS-Q 65 L W+ F+ R+ MK+S IRE+LK+ +PDI SFAGG+P P FP E + A+ + S Sbjct: 2 LDWEQIFATRSSRMKASEIRELLKLLEQPDIISFAGGIPDPALFPAEEFQQAYAEIFSGA 61 Query: 66 QGKMALQYGPTDGYLPLREWIAASLSTDGAQITAEQVLMVSGSQQGLDLLGKVMIDEGSK 125 Q ALQY ++GY PLREW+A + G TA+ V +VSGSQQGLD LGK+ + Sbjct: 62 QVNAALQYSVSEGYKPLREWLAGEMDKIGIDCTADNVFIVSGSQQGLDYLGKLFLSPKDT 121 Query: 126 VLVETPSYLGALQAFSLYGAKFESV-PSDEFGLQP--ETIEAIAGGARMLYSLPNFQNPT 182 LV P+YLGAL AF+ Y ++ + P + ET + G + Y +F NPT Sbjct: 122 ALVTWPTYLGALSAFNAYEPNYDQLNPGGNRTPEAYRETAAKLGGAVKFAYLSADFSNPT 181 Query: 183 GRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMN--------PSGVIY 234 G T+ R K++ L + +IED Y +L Y +P +++++ + IY Sbjct: 182 GETVDLAGREKVLALADELDIAVIEDAAYQSLRYDGEAVPPIMALDIARSGGIENTRTIY 241 Query: 235 MGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVP 294 GSFSK L PG+R+GY+VA P+I K+ KQA DLH++ + Q+ + GF D+ V Sbjct: 242 CGSFSKTLAPGLRVGYIVASAPVIRKLVLMKQAADLHSSTINQIAIERVAARGF-DKQVA 300 Query: 295 TIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHLDASALLNEAVEQEKVA 354 I+ Y + AML AL++Y P + SW+KPEGGMFIWVTLPE +D +ALL +++ EKVA Sbjct: 301 KIKAAYSARRDAMLSALEKYMPKTTSWTKPEGGMFIWVTLPEGMDGAALLAKSIATEKVA 360 Query: 355 FVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIAS 396 FVPG F+A+ + NTLR+SF I G++RLG+LI + Sbjct: 361 FVPGRAFFADGSGTNTLRISFSCANEAMIEEGMKRLGRLITT 402