BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0174.p (314 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 473 e-133 Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 442 e-124 ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 442 e-124 yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 442 e-124 STM0851 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 423 e-118 >RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 299 Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/287 (80%), Positives = 258/287 (89%) Query: 28 ASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAENFFDYDALNSP 87 A+ + +RTPW EFWRKF+KQ LA+ AGVF++ L++ AILAP +VPFD EN+FDYDALN+ Sbjct: 13 AASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVAAILAPHLVPFDPENYFDYDALNAG 72 Query: 88 PTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWWDRIV 147 P+ HWFGVDSLGRDIFSRILMG RISL +GF SV IGA+IGTV GLLAGYYEGWWDRIV Sbjct: 73 PSAAHWFGVDSLGRDIFSRILMGTRISLEAGFVSVVIGALIGTVLGLLAGYYEGWWDRIV 132 Query: 148 MRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIE 207 MRICDVLFAFPGILLAIGIVAILG GM NVI +V+VFS+PAFARLVRGNTL LK+LTY+E Sbjct: 133 MRICDVLFAFPGILLAIGIVAILGNGMANVIFAVAVFSVPAFARLVRGNTLMLKHLTYVE 192 Query: 208 ATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLM 267 A RSIGASD TI+ +HI PGTIS+IVVYF+MRIGTSIITAA LSFLGLGAQ PTPEWG M Sbjct: 193 AARSIGASDRTILLRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPTPEWGAM 252 Query: 268 LNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 314 LNEARADMVT+PHVA+ PS+AIFLTVLAFNLLGDGLRDALDPKID+R Sbjct: 253 LNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDRR 299 >Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/296 (71%), Positives = 254/296 (85%), Gaps = 9/296 (3%) Query: 17 PLPPPDPAAVAASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAE 76 PL PD ++RTPW EFWR+F++Q +A+ A +F++LLI++AI A WI P+DAE Sbjct: 16 PLVKPD---------QVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAE 66 Query: 77 NFFDYDALNSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLA 136 N+FDYD LN+ P+ HWFGVDSLGRDIFSR+L+GA+ISLA+G F+V IGA IGT+ GLLA Sbjct: 67 NYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLA 126 Query: 137 GYYEGWWDRIVMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGN 196 GYYEGWWDR++MRICDVLFAFPGILLAI +VA+LG G+ NVII+V++FSIPAFARLVRGN Sbjct: 127 GYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGN 186 Query: 197 TLQLKNLTYIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLG 256 TL LK T+IE+ RSIGASD TI+ +HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLG Sbjct: 187 TLVLKQQTFIESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLG 246 Query: 257 AQSPTPEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 312 AQ PTPEWG MLNEARADMV +PHVA+ P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 247 AQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 303 Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/296 (71%), Positives = 254/296 (85%), Gaps = 9/296 (3%) Query: 17 PLPPPDPAAVAASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAE 76 PL PD ++RTPW EFWR+F++Q +A+ A +F++LLI++AI A WI P+DAE Sbjct: 16 PLVKPD---------QVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAE 66 Query: 77 NFFDYDALNSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLA 136 N+FDYD LN+ P+ HWFGVDSLGRDIFSR+L+GA+ISLA+G F+V IGA IGT+ GLLA Sbjct: 67 NYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLA 126 Query: 137 GYYEGWWDRIVMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGN 196 GYYEGWWDR++MRICDVLFAFPGILLAI +VA+LG G+ NVII+V++FSIPAFARLVRGN Sbjct: 127 GYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGN 186 Query: 197 TLQLKNLTYIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLG 256 TL LK T+IE+ RSIGASD TI+ +HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLG Sbjct: 187 TLVLKQQTFIESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLG 246 Query: 257 AQSPTPEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 312 AQ PTPEWG MLNEARADMV +PHVA+ P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 247 AQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 303 Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/296 (71%), Positives = 254/296 (85%), Gaps = 9/296 (3%) Query: 17 PLPPPDPAAVAASGQKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAE 76 PL PD ++RTPW EFWR+F++Q +A+ A +F++LLI++AI A WI P+DAE Sbjct: 16 PLVKPD---------QVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAE 66 Query: 77 NFFDYDALNSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLA 136 N+FDYD LN+ P+ HWFGVDSLGRDIFSR+L+GA+ISLA+G F+V IGA IGT+ GLLA Sbjct: 67 NYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLA 126 Query: 137 GYYEGWWDRIVMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGN 196 GYYEGWWDR++MRICDVLFAFPGILLAI +VA+LG G+ NVII+V++FSIPAFARLVRGN Sbjct: 127 GYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGN 186 Query: 197 TLQLKNLTYIEATRSIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLG 256 TL LK T+IE+ RSIGASD T++ +HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLG Sbjct: 187 TLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLG 246 Query: 257 AQSPTPEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 312 AQ PTPEWG MLNEARADMV +PHVA+ P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 247 AQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >STM0851 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sty Salmonella typhimurium LT2 Length = 303 Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/282 (75%), Positives = 252/282 (89%) Query: 31 QKIRTPWREFWRKFKKQRLAVYAGVFILLLILIAILAPWIVPFDAENFFDYDALNSPPTW 90 +IRTPWREFWR+F++Q +A+ AG F+L LIL+AI A W+ P+DAEN+FDYD+LN+ P+ Sbjct: 21 DQIRTPWREFWRRFRRQHVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNGPSL 80 Query: 91 THWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWWDRIVMRI 150 HWFGVDSLGRDIFSR+L+GA+ISLA+G F+V IGA+IGTV GLLAGYYEGWWDR +MRI Sbjct: 81 QHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAIIGTVLGLLAGYYEGWWDRFIMRI 140 Query: 151 CDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIEATR 210 CDVLFAFPGILLAI +VA+LG G+ NVI++V++FSIPAFARLVRGNTL LK T+IE+ R Sbjct: 141 CDVLFAFPGILLAIAVVAVLGSGIANVIVAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200 Query: 211 SIGASDTTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNE 270 SIGASDTTI++ HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLGAQ PTPEWG MLNE Sbjct: 201 SIGASDTTILFSHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNE 260 Query: 271 ARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 312 ARADMV +PHVAL P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 261 ARADMVIAPHVALFPAVAIFLTVLAFNLLGDGLRDALDPKIK 302