BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0163.p (195 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 176 4e-44 MA4250 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 166 3e-41 SMa1437 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 165 6e-41 PAB0092 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 163 2e-40 AGl3101 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 162 4e-40 >AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 328 Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 129/193 (66%) Query: 1 LXAARPRGWANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVPLSVDWHANL 60 L A + W + ++AL G+S+P+FWLG++ I+L +VKLGWLPASG+ + VD ++ Sbjct: 132 LAAVKKNTWIDYTANIVALSGLSIPNFWLGIMLILLVSVKLGWLPASGYESIFVDPVRSI 191 Query: 61 IAMIMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIP 120 MIMP V G +A LMR RS+++ VL+ DYIRTA +KGL +++L H+ RNA++P Sbjct: 192 ETMIMPAFVLGNALAATLMRHTRSAMVAVLSSDYIRTARAKGLSPREIILSHSFRNALLP 251 Query: 121 VVTASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNL 180 V+T L+ +L G V+TE IF IPG GKM VDA+F RDY VQ VL V +++NL Sbjct: 252 VITLLALLFGELLAGAVLTEQIFTIPGFGKMTVDAVFTRDYAVVQGIVLCTAVGFILMNL 311 Query: 181 CVDLLYSVIDPRI 193 D+ Y +++PR+ Sbjct: 312 LADIAYVLLNPRL 324 >MA4250 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mac Methanosarcina acetivorans str.C2A Length = 315 Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 123/193 (63%), Gaps = 5/193 (2%) Query: 1 LXAARPRGWANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVPLSVDWHANL 60 L A + W + + L AL G+S+P+FW G L I++FAV L LPA GF + + Sbjct: 122 LAALKRDTWIDDLSRLFALLGVSMPNFWQGYLMILVFAVFLRILPAGGF-----GENGDF 176 Query: 61 IAMIMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIP 120 + +I+PM+ G +AI MR+ RSS LEVL EDYI A +KGL + V+ HAL+NAMIP Sbjct: 177 LHLILPMLTLGTSSAAITMRLTRSSFLEVLQEDYIYAARAKGLSEKVVIGKHALKNAMIP 236 Query: 121 VVTASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNL 180 V+T +GL +L G + E++F PG+G +IV++I+ RDY +Q +L V+ V +NL Sbjct: 237 VITMAGLNFGYLLNGSAVVETVFAWPGLGNLIVNSIYNRDYPMIQGTLLFVAVLFVTINL 296 Query: 181 CVDLLYSVIDPRI 193 VDL YS +DPRI Sbjct: 297 LVDLSYSYLDPRI 309 >SMa1437 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sme Sinorhizobium meliloti Length = 304 Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 81/193 (41%), Positives = 132/193 (68%), Gaps = 8/193 (4%) Query: 1 LXAARPRGWANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVPLSVDWHANL 60 L AARP + I L++L G S P FW+ ++ I++FAV LG LP SG ++ W Sbjct: 118 LAAARPGSLFDRIAGLVSLAGASTPDFWIAIVGILVFAVGLGILPTSG-TGTALHW---- 172 Query: 61 IAMIMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIP 120 IMP+VV LR +L+++VR +++ L +I+TA +KG++ +++ GHALRN+++P Sbjct: 173 ---IMPIVVLMLRPFGLLVQVVRGTMISALASPFIKTAHAKGMKRRKIIFGHALRNSLLP 229 Query: 121 VVTASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNL 180 V+T +G + +G++ G V+ E+IFG PG+GK+++D+I QRD+ VQ+ +L + + IVN+ Sbjct: 230 VITVAGDLATGLINGAVVVETIFGWPGIGKLMIDSIIQRDFAVVQSTILVTAIAIFIVNI 289 Query: 181 CVDLLYSVIDPRI 193 +DLLY+V+DPRI Sbjct: 290 AIDLLYAVLDPRI 302 >PAB0092 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Pab Pyrococcus abyssi Length = 310 Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 122/177 (68%), Gaps = 8/177 (4%) Query: 17 IALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVPLSVDWHANLIAMIMPMVVTGLRESA 76 +A+F MS+P+FWLG+L I++F VKLG LP SG DW +I+P + GL + A Sbjct: 136 LAVFFMSMPYFWLGILLILIFGVKLGILPISG----PGDWRH----LILPSLTLGLPQVA 187 Query: 77 ILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIPVVTASGLMVSGMLGGL 136 ++ R+ R+++L+VL +DYI TA +KGL + VV HALRNA+IP+VT L + + GG Sbjct: 188 VIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTYMFLQIPWLFGGA 247 Query: 137 VITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNLCVDLLYSVIDPRI 193 V+TE++FG PGMG ++V AIFQRDY VQA VL V+ VI N D+ Y++IDPR+ Sbjct: 248 VVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADITYTIIDPRV 304 >AGl3101 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 128/192 (66%), Gaps = 1/192 (0%) Query: 3 AARPRG-WANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVPLSVDWHANLI 61 AA RG + + T IA+ S+P FWLG++ + FAV+L P SG+ + + Sbjct: 120 AAYRRGSFVDQAATTIAMLAASIPSFWLGLILMQFFAVRLDLFPVSGYGGPGASFLERMY 179 Query: 62 AMIMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIPV 121 + +P + GL SA+++R R+S+L+VL +DY+RTA +KG+++ +VV+ HAL+NA+IP+ Sbjct: 180 HLTLPAIALGLVSSALILRFTRASMLDVLGDDYVRTARAKGVKERRVVMKHALKNALIPI 239 Query: 122 VTASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNLC 181 +T GL + ++ G V+TE++FG+PG+G ++V A+ +RDY +Q +L + V++N Sbjct: 240 LTVLGLTAAVLISGAVVTETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAGLYVLINFA 299 Query: 182 VDLLYSVIDPRI 193 +D+LY ++DPR+ Sbjct: 300 IDMLYLLVDPRV 311