BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0162.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA4250 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans...   105   3e-23
AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans...   102   2e-22
BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tr...   101   4e-22
HP0299 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans...    97   8e-21
jhp0284 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran...    97   8e-21

>MA4250 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components Mac Methanosarcina
           acetivorans str.C2A
          Length = 315

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 74/119 (62%), Gaps = 3/119 (2%)

Query: 7   LPKLARRLLLSVPTLLLVSMVVFSLLAVLPGDPVAAILGME---ATPEAAAALRLKLGLD 63
           L  + R+++   P  L +S+V FSL+ V PGDP   IL      A P A    R+K G D
Sbjct: 2   LTHILRKIVFMAPVFLFISIVSFSLIYVTPGDPAEIILTSSSGGADPAAVEEFRIKEGFD 61

Query: 64  DPLLVQYGRWLWAVLHGDLGRSFIDNTPVADALWQRLPVTIELAIGSFLVAVVIAVPAG 122
            PL VQY  WL  VLHG+LG S++   PV++A+ Q    T++LAI SFLV++VI++PAG
Sbjct: 62  KPLYVQYLNWLGDVLHGELGYSYMSERPVSEAILQAFSATLKLAIASFLVSLVISIPAG 120


>AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 328

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 75/113 (66%)

Query: 10  LARRLLLSVPTLLLVSMVVFSLLAVLPGDPVAAILGMEATPEAAAALRLKLGLDDPLLVQ 69
           + +RLL+++PTLL++S+ VFSL  +LPGDPV A+ G E  P     LR K  L+DP+ +Q
Sbjct: 18  IGKRLLVAIPTLLIISIFVFSLQKLLPGDPVLAMAGEERDPATIEFLREKYRLNDPVPLQ 77

Query: 70  YGRWLWAVLHGDLGRSFIDNTPVADALWQRLPVTIELAIGSFLVAVVIAVPAG 122
           Y  WL  V+ GD G S   N PV + + Q+LPVTI+LA+ +   A+VI +P G
Sbjct: 78  YLNWLGGVVTGDFGISLRTNQPVLELIGQKLPVTIQLAVMAMFFAMVIGIPIG 130


>BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components Bme Brucella melitensis
          Length = 315

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 8/122 (6%)

Query: 1   MATTIKLPKLARRLLLSVPTLLLVSMVVFSLLAVLPGDPVAAILGMEATPEAAAALRLKL 60
           M T + L ++A+    ++P +L+V+++ F L+ +LPGDP   I G  A+PE    +R++L
Sbjct: 1   MMTALILKRVAQ----AIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVEL 56

Query: 61  GLDDPLLVQYGRWLWAVLHGDLGRSFIDNTPVADALWQRLPVTIELAIGSFLVAVVIAVP 120
           GLD P +VQ G+WLW + H DLGRSF+ + PV+ A+ +RLPVTI LA    L+A  I +P
Sbjct: 57  GLDQPTVVQLGQWLWNLFHFDLGRSFLLSQPVSQAIAERLPVTISLA----LLAFAITIP 112

Query: 121 AG 122
            G
Sbjct: 113 VG 114


>HP0299 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components Hpy Helicobacter pylori
           26695
          Length = 334

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 73/116 (62%)

Query: 7   LPKLARRLLLSVPTLLLVSMVVFSLLAVLPGDPVAAILGMEATPEAAAALRLKLGLDDPL 66
           L  + +R+L ++PTL  VS++VF ++ ++PGDP   ILG +A   A  ALR + GL+ PL
Sbjct: 2   LSFIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPL 61

Query: 67  LVQYGRWLWAVLHGDLGRSFIDNTPVADALWQRLPVTIELAIGSFLVAVVIAVPAG 122
           + QY  ++  VLHG+ G S +   PV    WQR P T+ELA+ +  +A+V+ +  G
Sbjct: 62  IEQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVG 117


>jhp0284 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components jHp Helicobacter pylori J99
          Length = 334

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 73/116 (62%)

Query: 7   LPKLARRLLLSVPTLLLVSMVVFSLLAVLPGDPVAAILGMEATPEAAAALRLKLGLDDPL 66
           L  + +R+L ++PTL  VS++VF ++ ++PGDP   ILG +A   A  ALR + GL+ PL
Sbjct: 2   LSFIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPL 61

Query: 67  LVQYGRWLWAVLHGDLGRSFIDNTPVADALWQRLPVTIELAIGSFLVAVVIAVPAG 122
           + QY  ++  VLHG+ G S +   PV    WQR P T+ELA+ +  +A+V+ +  G
Sbjct: 62  IEQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVG 117