BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0121.p (363 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1044 [OU] COG0616 Periplasmic serine proteases (ClpP class) R... 399 e-111 PA2973 [OU] COG0616 Periplasmic serine proteases (ClpP class) Pa... 284 2e-76 NMB2127 [OU] COG0616 Periplasmic serine proteases (ClpP class) N... 238 1e-62 NMA0305 [OU] COG0616 Periplasmic serine proteases (ClpP class) N... 238 1e-62 mll7424 [OU] COG0616 Periplasmic serine proteases (ClpP class) M... 177 3e-44 >RSc1044 [OU] COG0616 Periplasmic serine proteases (ClpP class) Rso Ralstonia solanacearum Length = 378 Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/312 (63%), Positives = 239/312 (76%), Gaps = 7/312 (2%) Query: 54 SGWERDVLEKLALFAVKEQRARRRWGIFFRIAILVVIVLGGWMAFTYNKIESEPL--GTH 111 +GWERDVLE++ L A++EQRA RRW IFFR L +I G + + + E E + G H Sbjct: 67 AGWERDVLERVLLAAIREQRAARRWRIFFRFVTLGII---GGLLYLFASFEGETVSSGRH 123 Query: 112 TALVEIRGTIESEGQGSAGVVIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEITR 171 TALV + G I + SA + +L+ AFA ++ GVILKINSPGGSPVQAGMIND+I R Sbjct: 124 TALVTLDGEIAANTNASADNINASLEAAFADDNTAGVILKINSPGGSPVQAGMINDDIRR 183 Query: 172 LRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKLG 231 LR Y P+YVVVEEMCASGGYY+A AADKIYV+KAS++GS+GVLMDGFGFTGLMDKLG Sbjct: 184 LRAKYKNIPLYVVVEEMCASGGYYVAAAADKIYVDKASIVGSIGVLMDGFGFTGLMDKLG 243 Query: 232 VERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDTFS 291 VERRLLTAG NK LDPFSP +P+QR++AQ+ML E+HQQFI+VV+QGRG+RLK+ P FS Sbjct: 244 VERRLLTAGTNKGMLDPFSPVAPQQRQFAQAMLDEVHQQFIDVVKQGRGSRLKDDPQLFS 303 Query: 292 GLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTENLSERVLKKFGVAFGAGFA 351 GL WTG+KAV+LGLADG G D VAR++IKA D+VDYT EN +ERV +KFG A GAG Sbjct: 304 GLFWTGAKAVDLGLADGIGGTDFVARNIIKAPDLVDYTVKENFAERVARKFGTAMGAGAI 363 Query: 352 KTLMSAPLSQLR 363 K L A QL+ Sbjct: 364 KAL--AATGQLK 373 >PA2973 [OU] COG0616 Periplasmic serine proteases (ClpP class) Pae Pseudomonas aeruginosa Length = 326 Score = 284 bits (727), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 147/299 (49%), Positives = 202/299 (67%), Gaps = 7/299 (2%) Query: 51 DKKSGWERDVLEKLALFAVKEQRARRRWGIFFR--IAILVVIVLGGWMAFTYNKIESEPL 108 D KS W+ +LEK L V+EQR RRWGIFF+ I + +VL + F + + Sbjct: 14 DDKS-WK--LLEKAVLAGVQEQRRARRWGIFFKSLTFIYLFVVLLAFSPFGSLEKSASRS 70 Query: 109 GTHTALVEIRGTIESEGQGSAGVVIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDE 168 G+HTAL+E++G I + SA ++ AL AF + G++L+INSPGGSPVQ+G I DE Sbjct: 71 GSHTALIEVKGMIADDEPASADNIVTALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDE 130 Query: 169 ITRLRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMD 228 I RLR +P +Y V+ ++ ASG YYIA AAD+IY +KASL+GS+GV FGF G M+ Sbjct: 131 IRRLRGEHPNVKVYAVISDLGASGAYYIASAADQIYADKASLVGSIGVTAASFGFVGTME 190 Query: 229 KLGVERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLK--ET 286 KLGVERR+ T+GE+KSFLDPF PQ P++ ++ Q +L H+QFI+ V++GRG RLK Sbjct: 191 KLGVERRVYTSGEHKSFLDPFQPQKPEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGH 250 Query: 287 PDTFSGLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTENLSERVLKKFGVA 345 P+ FSGLVW+G +A++LGL DG G VAR+V+K + + DYT E+ +R KKFG + Sbjct: 251 PELFSGLVWSGEQALQLGLIDGLGNASYVAREVVKEKKIEDYTVQESPFDRFAKKFGAS 309 >NMB2127 [OU] COG0616 Periplasmic serine proteases (ClpP class) Nme Neisseria meningitidis MC58 Length = 328 Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 196/308 (63%), Gaps = 10/308 (3%) Query: 56 WERDVLEKLALFAVKEQRARRRWGIFFR-IAILVVIVLGGWMAFTYNKIES--EPLGT-- 110 WERD++ ++ L A +++R R W +R ++ L+++ L +A + K E+ + G Sbjct: 22 WERDIMREVLLSAYQDRRRERMWKNIWRAVSTLILVAL---IAGIFRKDEAALQLAGNTP 78 Query: 111 HTALVEIRGTIESEGQGSAGVVIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEIT 170 HTA+V + G I + + + ++ A+ + ++++ NSPGGSPV + +EI Sbjct: 79 HTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIR 138 Query: 171 RLRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKL 230 RL+ +P P+Y+V E+MCASG YYIA AADKIY + +S++GS+GV+ F TGLM+K+ Sbjct: 139 RLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKI 198 Query: 231 GVERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLK--ETPD 288 GV+RR+ AG NK DPFSP++P+Q + + ML IH +FI+ V+ GRG RLK + PD Sbjct: 199 GVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPD 258 Query: 289 TFSGLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTENLSERVLKKFGVAFGA 348 FSG V+TG+ A+++GL DG G + SVARDV+KA DVVDYT ++ + ++FG A Sbjct: 259 VFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKA 318 Query: 349 GFAKTLMS 356 + L + Sbjct: 319 SVREALQA 326 >NMA0305 [OU] COG0616 Periplasmic serine proteases (ClpP class) NmA Neisseria meningitidis Z2491 Length = 328 Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 196/308 (63%), Gaps = 10/308 (3%) Query: 56 WERDVLEKLALFAVKEQRARRRWGIFFR-IAILVVIVLGGWMAFTYNKIES--EPLGT-- 110 WERD++ ++ L A +++R R W +R ++ L+++ L +A + K E+ + G Sbjct: 22 WERDMMREVLLSAYRDRRRERMWKNIWRAVSTLILVAL---IAGIFRKDEAALQLAGNTP 78 Query: 111 HTALVEIRGTIESEGQGSAGVVIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEIT 170 HTA+V + G I + + + ++ A+ + ++++ NSPGGSPV + +EI Sbjct: 79 HTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIR 138 Query: 171 RLRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKL 230 RL+ +P P+Y+V E+MCASG YYIA AADKIY + +S++GS+GV+ F TGLM+K+ Sbjct: 139 RLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKI 198 Query: 231 GVERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLK--ETPD 288 GV+RR+ AG NK DPFSP++P+Q + + ML IH +FI+ V+ GRG RLK + PD Sbjct: 199 GVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPD 258 Query: 289 TFSGLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTENLSERVLKKFGVAFGA 348 FSG V+TG+ A+++GL DG G + SVARDV+KA DVVDYT ++ + ++FG A Sbjct: 259 VFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKA 318 Query: 349 GFAKTLMS 356 + L + Sbjct: 319 SVREALQA 326 >mll7424 [OU] COG0616 Periplasmic serine proteases (ClpP class) Mlo Mesorhizobium loti Length = 286 Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/208 (44%), Positives = 139/208 (66%), Gaps = 6/208 (2%) Query: 114 LVEIRGTIESEGQGSAGVVIPA----LDKAFAASDSVGVILKINSPGGSPVQAGMINDEI 169 ++ + GTI + GQ + + + ++KAF+ D+ V + INSPGGSPVQ+ +I I Sbjct: 22 VIRLHGTIMAGGQFRQNLSLASTAGLIEKAFSF-DAPAVAISINSPGGSPVQSRLIFRRI 80 Query: 170 TRLRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDK 229 L A K + V VE++ ASGGY IAVA D+I+ + +S++GS+GV+ FGF LM K Sbjct: 81 RDL-AAEKNKKVLVFVEDVAASGGYMIAVAGDEIFADPSSIVGSIGVVSASFGFPELMKK 139 Query: 230 LGVERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDT 289 +GVERR+ TAG+NK+ LDPF P+ + E +++ E+H+ FI++V++ RGT+LK+ PD Sbjct: 140 IGVERRVHTAGQNKAVLDPFKPEKKEDVERLKALQLEVHETFIDLVKERRGTKLKDDPDL 199 Query: 290 FSGLVWTGSKAVELGLADGYGTVDSVAR 317 F+GL WTG K +ELGL D G + +V + Sbjct: 200 FTGLFWTGKKGLELGLVDALGDMRTVLK 227