BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0115.p         (113 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2345 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstoni...   157   6e-39
RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstoni...   146   1e-35
glnB [E] COG0347 Nitrogen regulatory protein PII Eco Escherichia...   146   1e-35
STM2561 [E] COG0347 Nitrogen regulatory protein PII Sty Salmonel...   146   1e-35
ECs3419 [E] COG0347 Nitrogen regulatory protein PII Ecs Escheric...   146   1e-35

>RSc2345 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstonia
           solanacearum
          Length = 112

 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 88/104 (84%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQ+TAIIKPFKLDEVRESLA+VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPK+K
Sbjct: 1   MKQITAIIKPFKLDEVRESLADVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDXRRKALRVWQAVAARC 104
           IEVVV D  V+Q +D I+KAA+TGKIGD +     V Q +  R 
Sbjct: 61  IEVVVADSQVDQVLDTIVKAAKTGKIGDGKIFVTAVEQVIRIRT 104


>RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstonia
           solanacearum
          Length = 112

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 87/104 (83%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK + AIIKPFKLDEVRE+L++VGV+G+TVTEVKGFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct: 1   MKLIMAIIKPFKLDEVREALSQVGVSGITVTEVKGFGRQKGHTELYRGAEYIVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDXRRKALRVWQAVAARC 104
           IEV V D V+E+AV+AI K+ARTGKIGD +     V Q +  R 
Sbjct: 61  IEVAVPDDVLERAVEAIEKSARTGKIGDGKIFVTDVEQVIRIRT 104


>glnB [E] COG0347 Nitrogen regulatory protein PII Eco Escherichia coli
           K12
          Length = 112

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 89/108 (82%), Gaps = 5/108 (4%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK++ AIIKPFKLD+VRE+LAEVG+TG+TVTEVKGFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct: 1   MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDXRRKALRVWQAVAARCPRLR 108
           IE+VV D +V+  VD II+ A+TGKIGD      +++    AR  R+R
Sbjct: 61  IEIVVPDDIVDTCVDTIIRTAQTGKIGDG-----KIFVFDVARVIRIR 103


>STM2561 [E] COG0347 Nitrogen regulatory protein PII Sty Salmonella
           typhimurium LT2
          Length = 112

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 89/108 (82%), Gaps = 5/108 (4%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK++ AIIKPFKLD+VRE+LAEVG+TG+TVTEVKGFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct: 1   MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDXRRKALRVWQAVAARCPRLR 108
           IE+VV D +V+  VD II+ A+TGKIGD      +++    AR  R+R
Sbjct: 61  IEIVVPDDIVDTCVDTIIRTAQTGKIGDG-----KIFVFDVARVIRIR 103


>ECs3419 [E] COG0347 Nitrogen regulatory protein PII Ecs Escherichia coli
           O157:H7
          Length = 112

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 89/108 (82%), Gaps = 5/108 (4%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK++ AIIKPFKLD+VRE+LAEVG+TG+TVTEVKGFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct: 1   MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDXRRKALRVWQAVAARCPRLR 108
           IE+VV D +V+  VD II+ A+TGKIGD      +++    AR  R+R
Sbjct: 61  IEIVVPDDIVDTCVDTIIRTAQTGKIGDG-----KIFVFDVARVIRIR 103