BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0105.p         (214 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2342 [O] COG0492 Thioredoxin reductase Rso Ralstonia solanace...   256   3e-68
VC1182 [O] COG0492 Thioredoxin reductase Vch Vibrio cholerae          243   2e-64
YPO1374 [O] COG0492 Thioredoxin reductase Ype Yersinia pestis         240   1e-63
STM0958 [O] COG0492 Thioredoxin reductase Sty Salmonella typhimu...   239   2e-63
trxB [O] COG0492 Thioredoxin reductase Eco Escherichia coli K12       239   3e-63

>RSc2342 [O] COG0492 Thioredoxin reductase Rso Ralstonia solanacearum
          Length = 318

 Score =  256 bits (653), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 146/187 (78%), Gaps = 4/187 (2%)

Query: 5   KHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQGPE 64
           KHAKVLILGSGPAGY+AA+YAARANLNP+LITG+ QGGQLMTTT+VENWP D  G+QGPE
Sbjct: 3   KHAKVLILGSGPAGYTAAIYAARANLNPMLITGLAQGGQLMTTTEVENWPADREGLQGPE 62

Query: 65  LMQRLLQHAERFNTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYLGLPS 124
           LMQR L+HAERF+T+++FDHIHT  L+E+P RL+GDSGEYT DALII+TGASAQYLGLPS
Sbjct: 63  LMQRFLEHAERFSTDVVFDHIHTAHLTEKPIRLVGDSGEYTCDALIISTGASAQYLGLPS 122

Query: 125 EQAFMGRGVSACATCDGFFYRGRAYLKLFXGRGRRRQH---RRGRSTVPLQHRQQGHHRA 181
           E+ F GRGVSACATCDGFFY+G+    +  G     +        S V L HR+    RA
Sbjct: 123 EETFSGRGVSACATCDGFFYKGQEVAVVGGGNTAVEEALYLANIASKVTLIHRRD-KFRA 181

Query: 182 PPRQVPR 188
            P  V R
Sbjct: 182 EPILVDR 188


>VC1182 [O] COG0492 Thioredoxin reductase Vch Vibrio cholerae
          Length = 318

 Score =  243 bits (621), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 129/147 (87%)

Query: 1   MSTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGV 60
           MS  KH+K+LILGSGPAGY+AAVYAARANL PVL+TG++QGGQL TTT+VENWPGD  G+
Sbjct: 1   MSNVKHSKLLILGSGPAGYTAAVYAARANLKPVLVTGMQQGGQLTTTTEVENWPGDAEGL 60

Query: 61  QGPELMQRLLQHAERFNTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYL 120
            GP LM+R+ +HAERF+TEI+FDHI++  LS RPFRL GDS EYT DALII+TGASA+YL
Sbjct: 61  TGPALMERMKEHAERFDTEIVFDHINSVDLSSRPFRLTGDSQEYTCDALIISTGASAKYL 120

Query: 121 GLPSEQAFMGRGVSACATCDGFFYRGR 147
           GL SE+AF GRGVSACATCDGFFYR +
Sbjct: 121 GLESEEAFKGRGVSACATCDGFFYRNQ 147


>YPO1374 [O] COG0492 Thioredoxin reductase Ype Yersinia pestis
          Length = 320

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 127/147 (86%)

Query: 1   MSTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGV 60
           MST KH+K++ILGSGPAGY+AAVYAARANL PVLITG+E+GGQL TTT+VENWPGDP G+
Sbjct: 1   MSTAKHSKLIILGSGPAGYTAAVYAARANLKPVLITGMEKGGQLTTTTEVENWPGDPEGL 60

Query: 61  QGPELMQRLLQHAERFNTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYL 120
            GP LM+R+ +HAE+F TEIIFDHI +  L  RPFRL GD  EYT DALIIATGASA+YL
Sbjct: 61  TGPALMERMHEHAEKFQTEIIFDHISSVDLQNRPFRLFGDGAEYTCDALIIATGASARYL 120

Query: 121 GLPSEQAFMGRGVSACATCDGFFYRGR 147
           G+ SE+AF G+GVSACATCDGFFYR +
Sbjct: 121 GMASEEAFKGKGVSACATCDGFFYRNQ 147


>STM0958 [O] COG0492 Thioredoxin reductase Sty Salmonella typhimurium LT2
          Length = 322

 Score =  239 bits (611), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 126/147 (85%)

Query: 1   MSTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGV 60
           M T KH+K+LILGSGPAGY+AAVYAARANL PVLITG+E+GGQL TTT+VENWPGDP  +
Sbjct: 1   MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL 60

Query: 61  QGPELMQRLLQHAERFNTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYL 120
            GP LM+R+ +HA +F TEIIFDHI+   L  RPFRL GDS EYT DALIIATGASA+YL
Sbjct: 61  TGPLLMERMHEHAAKFETEIIFDHINNVDLQNRPFRLTGDSAEYTCDALIIATGASARYL 120

Query: 121 GLPSEQAFMGRGVSACATCDGFFYRGR 147
           GLPSE+AF GRGVSACATCDGFFYR +
Sbjct: 121 GLPSEEAFKGRGVSACATCDGFFYRNQ 147


>trxB [O] COG0492 Thioredoxin reductase Eco Escherichia coli K12
          Length = 321

 Score =  239 bits (610), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 127/147 (86%)

Query: 1   MSTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGV 60
           M T KH+K+LILGSGPAGY+AAVYAARANL PVLITG+E+GGQL TTT+VENWPGDP  +
Sbjct: 1   MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL 60

Query: 61  QGPELMQRLLQHAERFNTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYL 120
            GP LM+R+ +HA +F TEIIFDHI+   L  RPFRL GD+GEYT DALIIATGASA+YL
Sbjct: 61  TGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYL 120

Query: 121 GLPSEQAFMGRGVSACATCDGFFYRGR 147
           GLPSE+AF GRGVSACATCDGFFYR +
Sbjct: 121 GLPSEEAFKGRGVSACATCDGFFYRNQ 147