BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0101.p (418 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2338 [L] COG2256 ATPase related to the helicase subunit of th... 320 3e-87 NMB1258 [L] COG2256 ATPase related to the helicase subunit of th... 314 2e-85 NMA1433 [L] COG2256 ATPase related to the helicase subunit of th... 313 4e-85 PA2613 [L] COG2256 ATPase related to the helicase subunit of the... 296 8e-80 PM0257 [L] COG2256 ATPase related to the helicase subunit of the... 267 3e-71 >RSc2338 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Rso Ralstonia solanacearum Length = 449 Score = 320 bits (821), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 175/262 (66%), Positives = 200/262 (76%), Gaps = 7/262 (2%) Query: 2 ADLFAQEPAA--PLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVG 59 A LF P A PLAE LRP ++DEVIGQ HLLG KPLR+AF SG+PHSMI WGPPGVG Sbjct: 3 ASLFPDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPGVG 62 Query: 60 KTTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQ 119 KTTLARL A AFD EFIALSAV SGVKDIR A+E+AEQ A G+ T++FVDE+HRFNKSQ Sbjct: 63 KTTLARLMADAFDAEFIALSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQ 122 Query: 120 QDALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKAL 179 QDA LP+ ESGL TFIGATTENPSFEVN ALLSRA VYVLKSL+D+ELKQL +RA+ + L Sbjct: 123 QDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERARQE-L 181 Query: 180 GDLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHT-TGTQVVTA---EFLQNALTLNS 235 G L + A D ++ ADGD R+ LN +E AA G++ V A L +AL+ N Sbjct: 182 GGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSENL 241 Query: 236 RRFDKGGDNFYDQISALHKSVR 257 RRFDKGGD FYDQISALHKSVR Sbjct: 242 RRFDKGGDAFYDQISALHKSVR 263 >NMB1258 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Nme Neisseria meningitidis MC58 Length = 436 Score = 314 bits (805), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 163/258 (63%), Positives = 202/258 (78%), Gaps = 1/258 (0%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 M DLFA+EP APLAE LRP TLD+V+GQ HL+GEGKPLR+A + GKPHSM+ WGPPGVGK Sbjct: 1 MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGK 60 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLAR+ A +F+ +F+ +SAVFSGVKDIR A+++AE L G+ TILFVDE+HRFNK+QQ Sbjct: 61 TTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQ 120 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQD-KAL 179 DA LP+ ESGL+TFIGATTENPSFEVN ALLSRAQVYVL+ L+ ++LK+L+ + Sbjct: 121 DAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEY 180 Query: 180 GDLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFD 239 + + A ++ ADGDARR LNLLEQ AA T + +TAEFL ++L RRFD Sbjct: 181 QEFTIETDAQKLLVNTADGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFD 240 Query: 240 KGGDNFYDQISALHKSVR 257 KGG++FY+QISALHKSVR Sbjct: 241 KGGESFYNQISALHKSVR 258 >NMA1433 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase NmA Neisseria meningitidis Z2491 Length = 436 Score = 313 bits (802), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 162/258 (62%), Positives = 201/258 (77%), Gaps = 1/258 (0%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 M DLFA+EP APLAE LRP TLD+V+GQ HL+GEGKPLR+A + GKPHSM+ WGPPGVGK Sbjct: 1 MTDLFAREPYAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGK 60 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLAR+ A +F+ +F+ +SAVFSGVKDIR A+++AE L G+ TILFVDE+HRFNK+QQ Sbjct: 61 TTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQ 120 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQD-KAL 179 DA LP+ ESGL+TFIGATTENPSFEVN ALLSRAQVYVL+ L+ ++LK+L+ + Sbjct: 121 DAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEY 180 Query: 180 GDLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFD 239 + + A ++ DGDARR LNLLEQ AA T + +TAEFL ++L RRFD Sbjct: 181 QEFTIETDAQKLLVNTVDGDARRLLNLLEQLLRAADTRRLKNLTAEFLADSLGAQIRRFD 240 Query: 240 KGGDNFYDQISALHKSVR 257 KGG++FY+QISALHKSVR Sbjct: 241 KGGESFYNQISALHKSVR 258 >PA2613 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Pae Pseudomonas aeruginosa Length = 441 Score = 296 bits (757), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 174/323 (53%), Positives = 209/323 (64%), Gaps = 23/323 (7%) Query: 3 DLFAQEPAA-PLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGKT 61 DLF EP A PLA LRP LDE +GQ HLL GKPLR A + G HSMIFWGPPGVGKT Sbjct: 2 DLFRSEPVAQPLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKT 61 Query: 62 TLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLA-MGKHTILFVDEIHRFNKSQQ 120 TLARL A D F +SAV SGVK+IR A+E A+Q+ A G+ TILFVDE+HRFNKSQQ Sbjct: 62 TLARLLAQVSDAHFETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQ 121 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRA--QDKA 178 DA LPY E G + FIGATTENPSFE+N+ALLSRA+VYVLKSL + L++L+ RA +DK Sbjct: 122 DAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNEDKG 181 Query: 179 LG--DLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSR 236 LG L +++ ++ ADGD RR LNLLE A G++ ++ E LQN L R Sbjct: 182 LGKRKLRLPEESFQVLLAAADGDGRRLLNLLENAADLAE-DGSE-ISPELLQNLLGDTRR 239 Query: 237 RFDKGGDNFYDQISALHKSVRAQ----ACACGAVFMRGACASGFGHLQQGQL----VGNV 288 RFDKGG+ FYDQISALHKSVR A A + G C + + ++ VGN Sbjct: 240 RFDKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEEVGNA 299 Query: 289 LP----LCMIG---QGRLGLGDG 304 P LC+ Q RLG +G Sbjct: 300 DPRALGLCLSAWDVQERLGSPEG 322 >PM0257 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Pmu Pasteurella multocida Length = 445 Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 140/277 (50%), Positives = 182/277 (65%), Gaps = 6/277 (2%) Query: 5 FAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGKTTLA 64 FAQ+ PLA +RP T + GQSHL+GEGKPLR A +G HSMI WGPPG GKTTLA Sbjct: 8 FAQQAFQPLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLA 67 Query: 65 RLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQDALL 124 + A + +SAV SG+K+IR A+E+A++N + TILFVDE+HRFNKSQQDA L Sbjct: 68 EIIAHQIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFL 127 Query: 125 PYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRA---QDKALGD 181 P+ E G + FIGATTENPSFE+N+ALLSRA+VY+LKSL+ +E+ ++LK+A +++ LG Sbjct: 128 PHIEDGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGLGK 187 Query: 182 LAF--DDQATDTIIGYADGDARRFLNLLE-QTQTAAHTTGTQVVTAEFLQNALTLNSRRF 238 + F ++ + + Y +GDAR LN LE A T + +T L+N L RF Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVLGERQARF 247 Query: 239 DKGGDNFYDQISALHKSVRAQACACGAVFMRGACASG 275 DK GD FYD ISALHKSVR A + A+G Sbjct: 248 DKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAG 284