BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0099.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA1433 [L] COG2256 ATPase related to the helicase subunit of th...   171   4e-43
NMB1258 [L] COG2256 ATPase related to the helicase subunit of th...   170   8e-43
RSc2338 [L] COG2256 ATPase related to the helicase subunit of th...   165   2e-41
PA2613 [L] COG2256 ATPase related to the helicase subunit of the...   134   8e-32
STM0962 [L] COG2256 ATPase related to the helicase subunit of th...   129   1e-30

>NMA1433 [L] COG2256 ATPase related to the helicase subunit of the Holliday
           junction resolvase NmA Neisseria meningitidis Z2491
          Length = 436

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 91/110 (82%)

Query: 29  ATLALYLAVAAKSNAGYNAYNAARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAH 88
           A   LYLA AAKSNAGY AYN  R FVK++ S EVPVHLRNAPTKLMKELGYG EYRYAH
Sbjct: 325 AQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAH 384

Query: 89  DEPNAYAAGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARK 138
           DEPNAYAAGE+Y+PDG+ EP +YQPVPRGLEIKIGEKL  L+  DE+  K
Sbjct: 385 DEPNAYAAGESYMPDGLDEPDFYQPVPRGLEIKIGEKLAWLKSLDEEVLK 434


>NMB1258 [L] COG2256 ATPase related to the helicase subunit of the Holliday
           junction resolvase Nme Neisseria meningitidis MC58
          Length = 436

 Score =  170 bits (430), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 91/110 (82%)

Query: 29  ATLALYLAVAAKSNAGYNAYNAARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAH 88
           A   LYLA AAKSNAGY AYN  R FVK++ S EVPVHLRNAPTKLMKELGYG EYRYAH
Sbjct: 325 AQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAH 384

Query: 89  DEPNAYAAGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARK 138
           DEPNAY+AGE+Y+PDG+ EP +YQPVPRGLEIKIGEKL  L+  DE+  K
Sbjct: 385 DEPNAYSAGESYMPDGLDEPDFYQPVPRGLEIKIGEKLEWLKSLDEEVLK 434


>RSc2338 [L] COG2256 ATPase related to the helicase subunit of the Holliday
           junction resolvase Rso Ralstonia solanacearum
          Length = 449

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 85/101 (84%)

Query: 33  LYLAVAAKSNAGYNAYNAARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPN 92
           +YLA+A KSNAGYNAYNAARAFV  DKSR VPVHLRNAPT+LMKELGYGH YRYAHDEP 
Sbjct: 334 IYLAIAPKSNAGYNAYNAARAFVGHDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPE 393

Query: 93  AYAAGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWD 133
           AYAAGETY PD ++  GWY P PRGLE KIG+KL  LR+ D
Sbjct: 394 AYAAGETYFPDDLSPQGWYVPTPRGLEGKIGDKLRHLRELD 434


>PA2613 [L] COG2256 ATPase related to the helicase subunit of the Holliday
           junction resolvase Pae Pseudomonas aeruginosa
          Length = 441

 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 78/101 (77%)

Query: 33  LYLAVAAKSNAGYNAYNAARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPN 92
           +YLA A KSNA Y+A+NAA   V +  SREVP+HLRNAPTKLMK LGYG EYRYAHDEP+
Sbjct: 331 VYLACAPKSNAVYSAFNAAMRDVAESGSREVPLHLRNAPTKLMKSLGYGEEYRYAHDEPD 390

Query: 93  AYAAGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWD 133
           AYAAGE Y P+ +    +YQPVPRGLE+KI +KL  L + D
Sbjct: 391 AYAAGEDYFPEDLEPRRYYQPVPRGLELKIRDKLEHLAELD 431


>STM0962 [L] COG2256 ATPase related to the helicase subunit of the Holliday
           junction resolvase Sty Salmonella typhimurium LT2
          Length = 447

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 77/104 (74%)

Query: 33  LYLAVAAKSNAGYNAYNAARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPN 92
           +YLA A KSNA Y A+ AA A  ++    +VPVHLRNAPTKLMKE+GYG EYRYAHDEPN
Sbjct: 338 VYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPN 397

Query: 93  AYAAGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDA 136
           AYAAGE Y P  IA+  +Y P  RGLE KIGEKL  L + D+++
Sbjct: 398 AYAAGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNS 441