BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0072.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1055 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 326 2e-89 PA0762 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 244 9e-65 VC2467 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 240 1e-63 YPO2711 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 239 3e-63 rpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma s... 239 4e-63 >RSc1055 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Rso Ralstonia solanacearum Length = 199 Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 158/198 (79%), Positives = 176/198 (88%) Query: 3 TEREIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRA 62 +ERE DQ LVERVQ+GDK+AFELLVVKY RK++RL+SRL+RD AE EDV Q+AFIKAYRA Sbjct: 2 SEREADQILVERVQQGDKRAFELLVVKYHRKIIRLISRLIRDAAEVEDVAQDAFIKAYRA 61 Query: 63 LPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPE 122 LPQFRG+SAFYTWLYRI +NTAKNYL T GRR +ST+ D EEAETF D + LRDINTP+ Sbjct: 62 LPQFRGESAFYTWLYRIAVNTAKNYLATQGRRPESSTDIDTEEAETFADGEQLRDINTPD 121 Query: 123 SMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRARE 182 SML TKQ+A+TVN AMEALPEELRTAITLREIEGLSY+EIA+AM CPIGTVRSRIFRARE Sbjct: 122 SMLHTKQVAETVNRAMEALPEELRTAITLREIEGLSYEEIAEAMECPIGTVRSRIFRARE 181 Query: 183 AIAEKLRPLLDTAADKRW 200 AIAEKLRPLL TA KRW Sbjct: 182 AIAEKLRPLLGTAEGKRW 199 >PA0762 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Pae Pseudomonas aeruginosa Length = 193 Score = 244 bits (623), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 121/188 (64%), Positives = 147/188 (78%), Gaps = 1/188 (0%) Query: 5 REIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALP 64 +E DQQLVERVQRGDK+AF+LLV+KYQ K++ L+ R V D EA+DV QEAFIKAYRAL Sbjct: 4 QEQDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYRALG 63 Query: 65 QFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESM 124 FRGDSAFYTWLYRI INTAKN+LV GRR P S + AE+AE F+ L+DI +PE Sbjct: 64 NFRGDSAFYTWLYRIAINTAKNHLVARGRRPPDS-DVTAEDAEFFEGDHALKDIESPERA 122 Query: 125 LATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAI 184 + +I TV+ ++ LPE+LRTA+TLRE EGLSY++IA M CP+GTVRSRIFRAREAI Sbjct: 123 MLRDEIEATVHQTIQQLPEDLRTALTLREFEGLSYEDIATVMQCPVGTVRSRIFRAREAI 182 Query: 185 AEKLRPLL 192 + L+PLL Sbjct: 183 DKALQPLL 190 >VC2467 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Vch Vibrio cholerae Length = 190 Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 110/190 (57%), Positives = 153/190 (80%), Gaps = 1/190 (0%) Query: 3 TEREIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRA 62 E+ DQ L+ERVQ GDK+AF LLV++YQ K+ L+SR V + + DV QEAFIKAYRA Sbjct: 2 NEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRA 61 Query: 63 LPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPE 122 +P FRG+SAFYTWLYRI +NTAKN++V RR P S + DAEEAE ++ D L++++ PE Sbjct: 62 IPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPAS-DVDAEEAEFYEGGDALKELSNPE 120 Query: 123 SMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRARE 182 ++ +K++ +TV A++ALP++L+TA+TLRE++GLSY+EIA+ M+CP+GTVRSRIFRARE Sbjct: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180 Query: 183 AIAEKLRPLL 192 A+ +K++PLL Sbjct: 181 AVEKKIKPLL 190 >YPO2711 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Ype Yersinia pestis Length = 191 Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/190 (60%), Positives = 153/190 (80%), Gaps = 2/190 (1%) Query: 3 TEREIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRA 62 +E+ DQ LVERVQ+GD+++F LLV++YQ K+ LVSR V Q + DVVQE+FIKAYRA Sbjct: 2 SEQLTDQMLVERVQKGDQQSFNLLVIRYQHKVASLVSRYV-PQGDVPDVVQESFIKAYRA 60 Query: 63 LPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPE 122 L FRGDSAFYTWLYRI +NTAKNYLV GRR P+S + DA +AE +++A L++I+ PE Sbjct: 61 LESFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS-DVDANDAENYENAGALKEISNPE 119 Query: 123 SMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRARE 182 +++ ++++ Q V +E+LPE+LR AITLRE++GLSY+EIA M+CP+GTVRSRIFRARE Sbjct: 120 NLMLSEELRQIVFKTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 Query: 183 AIAEKLRPLL 192 AI K++PL+ Sbjct: 180 AIDNKVQPLI 189 >rpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Eco Escherichia coli K12 Length = 191 Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/190 (62%), Positives = 150/190 (78%), Gaps = 2/190 (1%) Query: 3 TEREIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRA 62 +E+ DQ LVERVQ+GD+KAF LLVV+YQ K+ LVSR V + DVVQEAFIKAYRA Sbjct: 2 SEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRA 60 Query: 63 LPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPE 122 L FRGDSAFYTWLYRI +NTAKNYLV GRR P+S + DA EAE F+ L++I+ PE Sbjct: 61 LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSS-DVDAIEAENFESGGALKEISNPE 119 Query: 123 SMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRARE 182 +++ ++++ Q V +E+LPE+LR AITLRE++GLSY+EIA M+CP+GTVRSRIFRARE Sbjct: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179 Query: 183 AIAEKLRPLL 192 AI K++PL+ Sbjct: 180 AIDNKVQPLI 189