BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0062.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1064 [R] COG1159 GTPase Rso Ralstonia solanacearum 405 e-113 NMA0889 [R] COG1159 GTPase NmA Neisseria meningitidis Z2491 310 2e-84 NMB0687 [R] COG1159 GTPase Nme Neisseria meningitidis MC58 310 2e-84 XF2247 [R] COG1159 GTPase Xfa Xylella fastidiosa 9a5c 301 1e-81 VC2460 [R] COG1159 GTPase Vch Vibrio cholerae 299 6e-81 >RSc1064 [R] COG1159 GTPase Rso Ralstonia solanacearum Length = 298 Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/298 (65%), Positives = 239/298 (80%), Gaps = 4/298 (1%) Query: 10 PESDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYV 69 PE +RCG +AIVGRPNVGKSTLMN LVG KVSITSRKAQTTRHRITGIQT ++ Q+V+V Sbjct: 2 PEG-FRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFV 60 Query: 70 DTPGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLLPANVPCILV 129 DTPGFQTRH+ ALN++LNR VT+TLT+ D +LFV+EAG +GP D +VL LLP P IL+ Sbjct: 61 DTPGFQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILI 120 Query: 130 LNKADRNKDKT---TLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPM 186 +NK DR T + F +++A F +VP+SAK R + RL VR LP+ PM Sbjct: 121 VNKVDRLDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKNRDDILRLLGIVRPYLPEGEPM 180 Query: 187 FDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERD 246 +D + +TDRSE+FLA+EIVREKVFR+ G+ELPY+STV+++KFE EG LRR+F ILV+RD Sbjct: 181 YDPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVVDKFETEGRLRRVFVTILVDRD 240 Query: 247 THKAMVIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 304 HKAM+IG KGA+LK+IST+AR+DME+LF G VYLE+WVKVKSGWADNEAGLRAYGYE Sbjct: 241 AHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWVKVKSGWADNEAGLRAYGYE 298 >NMA0889 [R] COG1159 GTPase NmA Neisseria meningitidis Z2491 Length = 307 Score = 310 bits (795), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 162/291 (55%), Positives = 216/291 (74%), Gaps = 2/291 (0%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 YRCG++AIVGRPNVGKSTLMN L+G K+SITS+KAQTTR+R+TGI T + Q+V+VDTPG Sbjct: 16 YRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPG 75 Query: 74 FQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLLPANVPCILVLNKA 133 FQT H NALN LN+ VT L DV++FV+EA F AD+ VL LP + P ILV+NK Sbjct: 76 FQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTPVILVVNKI 135 Query: 134 DRNK--DKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 191 D++K D+ L F V + +FAA VSAK ++ L E ++ LP++ PM+ ED Sbjct: 136 DKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDM 195 Query: 192 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDTHKAM 251 +TD+S +FLA EIVREK+FR++GEELPY V +E+FE+E L RI+ A+LV++++ KA+ Sbjct: 196 VTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAI 255 Query: 252 VIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYG 302 +IG+ G RLK+IST+ARLDME+LF V+L++WVKVKSGWAD+ LR G Sbjct: 256 LIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADDIRFLRELG 306 >NMB0687 [R] COG1159 GTPase Nme Neisseria meningitidis MC58 Length = 324 Score = 310 bits (794), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 162/291 (55%), Positives = 216/291 (74%), Gaps = 2/291 (0%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 YRCG++AIVGRPNVGKSTLMN L+G K+SITS+KAQTTR+R+TGI T + Q+V+VDTPG Sbjct: 33 YRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPG 92 Query: 74 FQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLLPANVPCILVLNKA 133 FQT H NALN LN+ VT L DV++FV+EA F AD+ VL LP + P ILV+NK Sbjct: 93 FQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTPVILVVNKI 152 Query: 134 DRNK--DKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 191 D++K D+ L F V + +FAA VSAK ++ L E ++ LP++ PM+ ED Sbjct: 153 DKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDM 212 Query: 192 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDTHKAM 251 +TD+S +FLA EIVREK+FR++GEELPY V +E+FE+E L RI+ A+LV++++ KA+ Sbjct: 213 VTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAI 272 Query: 252 VIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYG 302 +IG+ G RLK+IST+ARLDME+LF V+L++WVKVKSGWAD+ LR G Sbjct: 273 LIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADDIRFLRELG 323 >XF2247 [R] COG1159 GTPase Xfa Xylella fastidiosa 9a5c Length = 298 Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 149/292 (51%), Positives = 195/292 (66%), Gaps = 1/292 (0%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 YRCG IA++GRPNVGKSTL N LVG K+SI S + QTTRHR+ GI T Q V VDTPG Sbjct: 7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPG 66 Query: 74 FQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLL-PANVPCILVLNK 132 + +N+ +NRT +L D L V E+ + D +LL +P +LV+NK Sbjct: 67 LHREQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINK 126 Query: 133 ADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDDI 192 DR KDK+ L+PF + +H F + PVSA +R L+ L ++ LLP+ PMF ED+I Sbjct: 127 IDRFKDKSALLPFLTHINENHTFTTIHPVSALKRKGLETLVSDLLALLPEGDPMFSEDEI 186 Query: 193 TDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDTHKAMV 252 TDRS++FLASE+VRE+V R +GEELPY +TV IE F + L RI A I VER++ KA+V Sbjct: 187 TDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFTENTGLFRIGALIWVERESQKAIV 246 Query: 253 IGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 304 IG+ GARLKEI +AR MERLF V+LE WV+V+ W++NEA L+ +GYE Sbjct: 247 IGKGGARLKEIGVKARQQMERLFQTKVFLETWVRVRKDWSNNEAALKTFGYE 298 >VC2460 [R] COG1159 GTPase Vch Vibrio cholerae Length = 325 Score = 299 bits (765), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 154/301 (51%), Positives = 207/301 (68%), Gaps = 6/301 (1%) Query: 7 AQTPESDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQY 66 A TPE+ + CG++AIVGRPNVGKSTL+N L+G K+SITSRK QTTRHRI G++T N Q Sbjct: 23 ASTPENQH-CGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQA 81 Query: 67 VYVDTPGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVL--DLLPANV 124 +YVDTPG A+N+ +NR +++L+ +++LFV+E GT AD +++ L AN Sbjct: 82 IYVDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVE-GTHWTADDEMVFTKLQKANF 140 Query: 125 PCILVLNKADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNP 184 P +L +NK D+ KD+ +M +++ F +VP+SAKQ D L++ VR LP+ Sbjct: 141 PVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVLKKHVRDHLPKAV 200 Query: 185 PMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLR--RIFAAIL 242 F E+ +TDRS++F+ASEIVREK+ RF GEELPY+ TV IE+F+ + I A IL Sbjct: 201 HHFPEEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALIL 260 Query: 243 VERDTHKAMVIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYG 302 VER K MVIG+ G ++K I +ARLDME LFG VYLE WVKVKSGWAD+E LR+ G Sbjct: 261 VERIGQKKMVIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERALRSLG 320 Query: 303 Y 303 Y Sbjct: 321 Y 321