BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0061.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1065 [L] COG1381 Recombinational DNA repair protein (RecF pat... 320 2e-87 HI0332 [L] COG1381 Recombinational DNA repair protein (RecF path... 160 2e-39 PM1867 [L] COG1381 Recombinational DNA repair protein (RecF path... 154 1e-37 STM2579 [L] COG1381 Recombinational DNA repair protein (RecF pat... 150 2e-36 YPO2720 [L] COG1381 Recombinational DNA repair protein (RecF pat... 149 6e-36 >RSc1065 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Rso Ralstonia solanacearum Length = 272 Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 161/238 (67%), Positives = 182/238 (76%), Gaps = 3/238 (1%) Query: 5 EHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSL 64 EH+V QP FVLHSYPY+ETSLIIDVF+RDHGRIALVAKGAKRPHS LR LQTFQPLSL Sbjct: 36 EHRVSQQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSALRAVLQTFQPLSL 95 Query: 65 SWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLN 124 SWSG+ EV+TLT AEWVGG+LPL LL GFYLNELLVK +ARED HP LF HYV TLN Sbjct: 96 SWSGRGEVKTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFSHYVETLN 155 Query: 125 KLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISD 184 KLAHGE LR FER+LL++TG A CV G+ VQPDG YV PE+G R SD Sbjct: 156 KLAHGEPVAFTLRAFERVLLRETGFAAQLDRCV-DGEPVQPDGDYVYHPERGIRRALPSD 214 Query: 185 RA--PKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQILIDLMQL 240 + P + G+TLLDMER+DYS P T QS+ LMR+LL +HL G L+TRQILIDL +L Sbjct: 215 PSSWPVLRGQTLLDMERDDYSRPATATQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL 272 >HI0332 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Hin Haemophilus influenzae Length = 236 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 11 QPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKS 70 Q GFVLH PY ETSL++D+F+ + GR+ ++AKGA+ S + LQ F PL L W+GKS Sbjct: 6 QRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKS 65 Query: 71 EVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGE 130 ++TLT AE LPL++ AL GFY+NELL +++ E +PALF HY+ L LA Sbjct: 66 TLKTLTKAEPAAITLPLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLATET 125 Query: 131 NAPIVLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKVS 190 N LR FE LL+ G ++ HC SG+ V Y E+G + D Sbjct: 126 NIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDNL-TFY 184 Query: 191 GKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQIL 234 G+ LL E D+SD + +K R L +LG L +R++ Sbjct: 185 GRDLLAFEALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELF 228 >PM1867 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Pmu Pasteurella multocida Length = 236 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 125/229 (54%), Gaps = 2/229 (0%) Query: 11 QPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKS 70 Q GFVLH Y ETSL++++F+ + GR+ ++AKGA+ S L+G LQ F PL L WSG+S Sbjct: 5 QRGFVLHRKAYSETSLLVELFTEETGRLTVLAKGARAKRSALKGILQPFTPLLLRWSGRS 64 Query: 71 EVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGE 130 E++TLT E LPL+++AL GFY+NELL ++L E +P LF Y+ L LA E Sbjct: 65 ELKTLTKVEPAAIALPLQQTALYSGFYVNELLCRVLEPETGYPHLFQDYLRCLTGLASAE 124 Query: 131 N-APIVLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKV 189 + LR FE LL+ G ++ HC SG+ V + Y E+G I D Sbjct: 125 HLIEPSLRHFEFQLLQTLGYGVDFCHCAGSGELVDENMTYRYREEKGFIASLIKDNLT-F 183 Query: 190 SGKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQILIDLM 238 G+ LL + + D T +K R L +LG L +R++ M Sbjct: 184 YGRELLAFDARQFHDSATLQAAKRFTRIALKQYLGNKPLKSRELFTQYM 232 >STM2579 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Sty Salmonella typhimurium LT2 Length = 242 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 123/229 (53%), Gaps = 2/229 (0%) Query: 11 QPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKS 70 Q FVLHS P+ ETSL++DVF+ + GR+ LVAKGA+ S L+GALQ F PL L +SG+ Sbjct: 5 QRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRG 64 Query: 71 EVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGE 130 EV+TL AE V LPL L G Y+NELL ++L E LF Y+ + LA Sbjct: 65 EVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTT 124 Query: 131 NAPI-VLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKV 189 +P LR+FE LL G N++HC SG+ V Y E+G + D Sbjct: 125 GSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASVVIDNN-TF 183 Query: 190 SGKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQILIDLM 238 +G+ L +E ++ D T +K R L +LGG L +R++ M Sbjct: 184 TGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFM 232 >YPO2720 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Ype Yersinia pestis Length = 241 Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 11 QPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKS 70 Q FVLH PY ETSL++D+F+ GR+ ++AKGA+ S L+G LQ F PL + WSG+ Sbjct: 5 QRAFVLHGRPYSETSLMLDLFTEGEGRMRVLAKGARGRRSNLKGCLQPFTPLLVRWSGRG 64 Query: 71 EVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGE 130 EV+TL AE V LPL S L G Y+NELL ++L + ++ ALF Y+ L LA + Sbjct: 65 EVKTLRSAEPVSLALPLSGSMLYSGLYVNELLSRVLEHQTSYSALFFDYLHCLQALAGSD 124 Query: 131 NAPI-VLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKV 189 +P LRQFE +L G ++ HC SG+ V Y E+G + D Sbjct: 125 GSPEHALRQFELAMLANLGYGVDFLHCAGSGQPVSDTMTYRYREEKGFIASLVVDHY-SF 183 Query: 190 SGKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQIL 234 +G+ LL + ++ D T +K R L +LGG L +R++ Sbjct: 184 TGRQLLALANREFPDADTLRAAKRFTRIALKPYLGGKPLKSRELF 228