BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0055.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2397 [H] COG2038 NaMN Rso Ralstonia solanacearum 276 6e-74 BH0284 [H] COG2038 NaMN Bha Bacillus halodurans 252 7e-67 PA1279 [H] COG2038 NaMN Pae Pseudomonas aeruginosa 244 1e-64 VC1237 [H] COG2038 NaMN Vch Vibrio cholerae 224 2e-58 CAC1372 [H] COG2038 NaMN Cac Clostridium acetobutylicum 207 2e-53 >RSc2397 [H] COG2038 NaMN Rso Ralstonia solanacearum Length = 354 Score = 276 bits (705), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 162/302 (53%), Positives = 202/302 (66%), Gaps = 5/302 (1%) Query: 11 QGSDHPLLRQSAIVVCAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINIFARQNECAL 70 Q ++ P+L + A+VV A DHGV GVSAYPQ+VT QMV NF+AGGAA+N+F RQ+ AL Sbjct: 44 QDTEAPVLIRPAMVVFAADHGVAQAGVSAYPQAVTAQMVLNFIAGGAAVNVFCRQHGFAL 103 Query: 71 YIVDTGVNHDFGPR--DGLLDRKIAPGTANFCQGPAMTAQQCQAALLAGLQFAES---LQ 125 IV+ GV GL+D I GT NF PAMTA + A+ G Q + L Sbjct: 104 EIVNAGVAMPLWSLGVPGLIDAPIGAGTRNFAHEPAMTAAERDRAMALGAQRVAAHAELG 163 Query: 126 ADVLGFGEMGIGNTTAAAALMAAFTGVPVQECVGAGTGLDAQGVARKADAVTRALRLHAQ 185 ++V+ GEMGIGNT +AA LMA +P+ +CVG G GLD G+ARK + AL HA Sbjct: 164 SNVIALGEMGIGNTASAACLMARLCDLPLAQCVGRGAGLDDAGLARKCAVLEAALAAHAD 223 Query: 186 ASAPLERLAALGGFEIAFMTGAMLGTAQRRKVILIDGFIVTSALLVAAALQPAVLEYCVF 245 A APL+ LA GGFEIA M GAML A+RR VIL+DGFI ++A LVA + P V +CVF Sbjct: 224 ARAPLDALACFGGFEIAAMAGAMLEAARRRMVILVDGFIASAAALVATRVAPEVQRFCVF 283 Query: 246 SHCSDEAGHRRMLQYLGATPLMQLDLRLGEGTGAALALPLLRAAVNFLERMATFSSASVS 305 +H SDE GHR +L LGA PL+QL +RLGEG+GA LA PL+ +AV FL MATF+SA VS Sbjct: 284 AHLSDEHGHRALLAALGAEPLLQLSMRLGEGSGAVLAYPLVVSAVAFLREMATFASAGVS 343 Query: 306 EK 307 E+ Sbjct: 344 EQ 345 >BH0284 [H] COG2038 NaMN Bha Bacillus halodurans Length = 357 Score = 252 bits (644), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 193/304 (63%), Gaps = 5/304 (1%) Query: 6 KPAGXQGSDHPLLRQSAIVVCAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINIFARQ 65 K AG G P + + ++V DHGV AEGVSAYP VT QMV NF+ GGAAIN+ +R Sbjct: 45 KIAGITGHTQPEIDPATVIVMVADHGVAAEGVSAYPSEVTQQMVHNFITGGAAINVLSRV 104 Query: 66 NECALYIVDTGVNHDFGPRDGLLDRKIAPGTANFCQGPAMTAQQCQAALLAGLQFAES-L 124 + ++ IVD GVN GL+++ + GT N QGP+M ++ AA+ G++ A++ + Sbjct: 105 SNASVQIVDIGVNGTL-QLPGLINKNVRHGTNNMAQGPSMEREEAIAAIEVGIEVAQAAI 163 Query: 125 Q--ADVLGFGEMGIGNTTAAAALMAAFTGVPVQECVGAGTGLDAQGVARKADAVTRALRL 182 Q A +L GEMGIGNTTA++A++AA VPV++ VG GTGL +G +K + RA+ + Sbjct: 164 QNGAKLLALGEMGIGNTTASSAMLAALEQVPVEQIVGFGTGLSHEGKEKKVAVIKRAIEV 223 Query: 183 HA-QASAPLERLAALGGFEIAFMTGAMLGTAQRRKVILIDGFIVTSALLVAAALQPAVLE 241 + A+ P++ LA +GG EIA + G +LG A R +L+DGFI A L A + P + Sbjct: 224 NQPNAADPIDVLAKVGGLEIAGLAGIVLGAAAWRIPVLVDGFITAVAALTAVRIAPLCVH 283 Query: 242 YCVFSHCSDEAGHRRMLQYLGATPLMQLDLRLGEGTGAALALPLLRAAVNFLERMATFSS 301 Y + SH S E GH + + LG TPL+ L+LRLGEG+G A+ALP++R+A+ MATF Sbjct: 284 YLIASHQSVEPGHVCVNKLLGLTPLVNLNLRLGEGSGTAIALPIVRSAIRIAHEMATFEQ 343 Query: 302 ASVS 305 A VS Sbjct: 344 AGVS 347 >PA1279 [H] COG2038 NaMN Pae Pseudomonas aeruginosa Length = 351 Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 148/304 (48%), Positives = 191/304 (62%), Gaps = 4/304 (1%) Query: 8 AGXQGSDHPLLRQSAIVVCAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINIFARQNE 67 A QG + P L + + V AGDHGV AEG+SAYPQ+VT +M+ NF+ GGAAI++ AR+ Sbjct: 46 AALQGRERPSLERIWVTVFAGDHGVVAEGISAYPQAVTGEMLRNFVRGGAAISVLARELG 105 Query: 68 CALYIVDTGVNHDFGPRDGLLDRKIAPGTANFCQGPAMTAQQCQAALLAG---LQFAESL 124 L +VD G G+ ++A GTANF + PAM A++C AL AG ++ AE Sbjct: 106 AGLEVVDLGTAFPLEALPGVRHLRLAAGTANFVEAPAMGAEECLLALEAGRESVRRAEQA 165 Query: 125 QADVLGFGEMGIGNTTAAAALMAAFTGVPVQECVGAGTGLDAQGVARKADAVTRALRLH- 183 + + GEMGIGNTTAAAA+ A P VG GTGLDA GVA KA + RAL LH Sbjct: 166 GSQLFIGGEMGIGNTTAAAAMACALLDAPASALVGPGTGLDASGVAHKAAVIERALALHG 225 Query: 184 AQASAPLERLAALGGFEIAFMTGAMLGTAQRRKVILIDGFIVTSALLVAAALQPAVLEYC 243 A + P E L LGG EIA + GA L AQ+ V L+DG+I + A L A L PA ++ Sbjct: 226 AHRADPFETLRRLGGLEIAALAGAYLACAQKGMVALVDGYICSVAALCAVRLNPACRDWL 285 Query: 244 VFSHCSDEAGHRRMLQYLGATPLMQLDLRLGEGTGAALALPLLRAAVNFLERMATFSSAS 303 +F+H E GHR +L+ L A PL+ L LRLGEG+GAALA+PLLR A MATF+ A+ Sbjct: 286 LFAHSGAEPGHRHVLEALAAQPLLDLGLRLGEGSGAALAVPLLRQACALHAGMATFAEAA 345 Query: 304 VSEK 307 VS++ Sbjct: 346 VSDR 349 >VC1237 [H] COG2038 NaMN Vch Vibrio cholerae Length = 369 Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/291 (43%), Positives = 186/291 (63%), Gaps = 4/291 (1%) Query: 18 LRQSAIVVCAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINIFARQNECALYIVDTGV 77 + Q ++V A DHG+ A+GVS P +VT QMV+NFLAGGAAIN F R A+ ++D G+ Sbjct: 79 IHQPTVLVFAADHGIAAQGVSIAPSAVTEQMVQNFLAGGAAINCFCRTEHAAMRVIDCGI 138 Query: 78 NHDFGPRDGLLDRKIAPGTANFCQGPAMTAQQCQAALLAG---LQFAESLQADVLGFGEM 134 L+++++ GT N + AM+++Q Q + G + ++L FGEM Sbjct: 139 LRAQPAHADLIEQRLGAGTHNLAEQAAMSSEQVQEGIALGKALIHREVESGCNLLMFGEM 198 Query: 135 GIGNTTAAAALMAAFTGVPVQECVGAGTGLDAQGVARKADAVTRALRLHAQASAPLERLA 194 GIGNT++AAA++AA +G+P++ CVG GTG+ + RK VT+ + +AP + L Sbjct: 199 GIGNTSSAAAILAALSGLPIEVCVGRGTGITDEQYQRKRALVTQGVE-RCLGAAPQDVLQ 257 Query: 195 ALGGFEIAFMTGAMLGTAQRRKVILIDGFIVTSALLVAAALQPAVLEYCVFSHCSDEAGH 254 +GGFEI M GA +G +++ +L+DGFIVT A VA ++P V ++ +F+HCS E GH Sbjct: 258 QVGGFEIVQMVGAFMGAYEKQTPVLVDGFIVTVAAYVATLIEPNVRDFLLFAHCSQETGH 317 Query: 255 RRMLQYLGATPLMQLDLRLGEGTGAALALPLLRAAVNFLERMATFSSASVS 305 R +L+ L A PL+ L LRLGEGTGA LAL L+RAAV F MA+F+ A V+ Sbjct: 318 RAVLEMLAAEPLLDLGLRLGEGTGAVLALGLVRAAVEFYNHMASFADAGVT 368 >CAC1372 [H] COG2038 NaMN Cac Clostridium acetobutylicum Length = 352 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 176/302 (58%), Gaps = 7/302 (2%) Query: 9 GXQGSDHPLLRQSAIVVCAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINIFARQNEC 68 G G +P ++ +++ D+G+ E VS+ P+SVT + NF+ G IN+F R Sbjct: 47 GITGEVYPSVKNKTVIIMCADNGIVEENVSSCPKSVTASVTRNFMKGFTGINVFTRHAGA 106 Query: 69 ALYIVDTGVNHDFGPRDGLLDRKIAPGTANFCQGPAMTAQQCQAALLAGLQFAESLQ--- 125 + ++D GV+ D +G++++KI GT+N +G AMT + L G++ + L+ Sbjct: 107 DIEVIDIGVDADIN-EEGIINKKIRRGTSNMIKGAAMTRDEALKGLEVGIEAVKELKDKG 165 Query: 126 ADVLGFGEMGIGNTTAAAALMAAFTGVPVQECVGAGTGLDAQGVARKADAVTRALRLHA- 184 +++G GEMG+GNTT ++A+ + TG PV E VG G+GL + K V A+ L+ Sbjct: 166 VNLIGTGEMGVGNTTTSSAVASVLTGCPVDEMVGIGSGLTKEAFRNKIQIVKEAIALNKP 225 Query: 185 QASAPLERLAALGGFEIAFMTGAMLGTAQRRKVILIDGFIVTSALLVAAALQPAVLEYCV 244 P++ L+ +GGF+IA + G LG A R I+IDGFI SA L+A + P V + + Sbjct: 226 NKEDPIDVLSKVGGFDIAGLAGCFLGAAIYRIPIVIDGFISASAALLAVKINPLVKNFII 285 Query: 245 FSHCSDEAGHRRMLQYLGATPLMQLDLRLGEGTGAALALPLLRAAV-NFLERMATFSSAS 303 SH S E G + +++ L P++ L +RLGEGTGAALA ++ AV ++LE M TF +A Sbjct: 286 PSHGSAEPGSKWIMKELDLEPMLNLKMRLGEGTGAALAFQIVDMAVFSYLE-MGTFENAE 344 Query: 304 VS 305 + Sbjct: 345 IE 346