BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0048.p         (71 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0023 [S] COG2879 Uncharacterized small protein Rso Ralstonia ...    86   2e-17
PA4605 [S] COG2879 Uncharacterized small protein Pae Pseudomonas...    83   1e-16
ybdD [S] COG2879 Uncharacterized small protein Eco Escherichia c...    81   5e-16
STM4531 [S] COG2879 Uncharacterized small protein Sty Salmonella...    80   1e-15
yjiX [S] COG2879 Uncharacterized small protein Eco Escherichia c...    79   2e-15

>RSc0023 [S] COG2879 Uncharacterized small protein Rso Ralstonia
          solanacearum
          Length = 64

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 50/63 (79%), Gaps = 2/63 (3%)

Query: 9  QLMAWRRQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGRVG 68
          ++ +  R +G+ + LMVG+P+YDTYV HM+  HPD  VMTYEEFFRERQ+ARY  KGRVG
Sbjct: 4  EIESLGRYLGQAMRLMVGVPDYDTYVRHMQETHPDQPVMTYEEFFRERQDARY--KGRVG 61

Query: 69 RCC 71
          RCC
Sbjct: 62 RCC 64


>PA4605 [S] COG2879 Uncharacterized small protein Pae Pseudomonas
          aeruginosa
          Length = 67

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 45/56 (80%), Gaps = 1/56 (1%)

Query: 17 VGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARY-GGKGRVGRCC 71
          +G+   ++VGMP+YDTYV HM+  HPD  VMTYEEFFRERQEARY GGKGR  RCC
Sbjct: 12 LGQAARMLVGMPDYDTYVEHMRNKHPDKPVMTYEEFFRERQEARYGGGKGRPIRCC 67


>ybdD [S] COG2879 Uncharacterized small protein Eco Escherichia coli
          K12
          Length = 65

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 15 RQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGRVGRCC 71
          + +G+   LM+GMP+YD YV HM+  HPD   MTYEEFFRERQ+ARYGGKG   RCC
Sbjct: 10 KYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGA-RCC 65


>STM4531 [S] COG2879 Uncharacterized small protein Sty Salmonella
          typhimurium LT2
          Length = 67

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 14 RRQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGRVG-RCC 71
          ++ +G+   +++G+P+YD YV HMK  HPD   MTYEEFFRERQ+ARYGG G+ G RCC
Sbjct: 9  KKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMTYEEFFRERQQARYGGDGKGGMRCC 67


>yjiX [S] COG2879 Uncharacterized small protein Eco Escherichia coli
          K12
          Length = 67

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 7  LAQLMAWRRQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGR 66
             L   ++ +G+   +++G+P+YD YV HMK  HPD   M+YEEFFRERQ ARYGG G+
Sbjct: 2  FGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSYEEFFRERQNARYGGDGK 61

Query: 67 VG-RCC 71
           G RCC
Sbjct: 62 GGMRCC 67