BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0045.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3702 [T] COG3706 Response regulator containing a CheY-like rec... 135 2e-31 sll1673_3 [T] COG2199 FOG Syn Synechocystis 130 4e-30 mll9509 [T] COG3706 Response regulator containing a CheY-like re... 129 7e-30 RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum 127 3e-29 all2874 [T] COG3706 Response regulator containing a CheY-like re... 126 6e-29 >PA3702 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Pae Pseudomonas aeruginosa Length = 347 Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 16/208 (7%) Query: 129 LCLIQISDASNSVRR-EKMLQSHSDVLKRQVGTDGLTGIHNRRHFDEHYAQTLQRVGKTG 187 + L Q +A ++R ++ L + VL+R + +DGLTG+ NRRHFDE+ +R + Sbjct: 141 IALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQ 200 Query: 188 GTLSLFMVDVEXAACGKDGRDAVADFFKQYNDHYGHGPGDQVLKRVAAALQGQLQRPGDL 247 LSL M+DV D+FK YND +GH GD+ L++VA A++ R DL Sbjct: 201 SQLSLLMIDV--------------DYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDL 246 Query: 248 LARYGGEEFILLMEGLSPRQAAEVAEALRETVYALAEPHAKSLVAHRVTISVGVCTRAV- 306 ARYGGEEF +++ G SP A +AE +R TV +L H + +T+S+GV T Sbjct: 247 AARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPG 306 Query: 307 QEGMDGRLLMSAADAALYRAKLGGRNKV 334 G R+L+ AD ALY+AK GRN+V Sbjct: 307 GGGQTFRVLIEMADQALYQAKNNGRNQV 334 >sll1673_3 [T] COG2199 FOG Syn Synechocystis Length = 176 Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 106/190 (55%), Gaps = 14/190 (7%) Query: 147 LQSHSDVLKRQVGTDGLTGIHNRRHFDEHYAQTLQRVGKTGGTLSLFMVDVEXAACGKDG 206 LQ+ + L+ DGLT I NRR FDE+ AQ QR + LSL +VD+ Sbjct: 1 LQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDI--------- 51 Query: 207 RDAVADFFKQYNDHYGHGPGDQVLKRVAAALQGQLQRPGDLLARYGGEEFILLMEGLSPR 266 D+FK YND YGH GD L++VA L +R DL+ARYGGEEF++++ + + Sbjct: 52 -----DYFKAYNDLYGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQ 106 Query: 267 QAAEVAEALRETVYALAEPHAKSLVAHRVTISVGVCTRAVQEGMDGRLLMSAADAALYRA 326 A +AE + + + ALA PH S V+ VTIS+GV + ++S AD ALY A Sbjct: 107 DALAMAENMLQAIAALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSA 166 Query: 327 KLGGRNKVVA 336 K GRN+ +A Sbjct: 167 KSQGRNRAIA 176 >mll9509 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Mlo Mesorhizobium loti Length = 354 Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 106/191 (55%), Gaps = 18/191 (9%) Query: 144 EKMLQSHSDVLKRQVGTDGLTGIHNRRHFDEHYAQTLQRVGKTGGTLSLFMVDVEXAACG 203 ++ L S + L+R DGLTG+ NRR+FDE+ A +R + LSL M+D Sbjct: 175 QRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMID------- 227 Query: 204 KDGRDAVADFFKQYNDHYGHGPGDQVLKRVAAALQGQLQRPGDLLARYGGEEFILLMEGL 263 AD FK+YND YGH GD+VLK++A + R DL ARYGGEEF++++ Sbjct: 228 -------ADNFKRYNDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDT 280 Query: 264 SPRQAAEVAEALRETVYALAEPHAKSLVAHRVTISVGVCTRAVQEGMDGRLLMSAADAAL 323 +++ +AE L + V L PH RVTISVGV T E ++AAD AL Sbjct: 281 LLEESSAIAEQLVQGVRELNIPHGPD----RVTISVGVATTVPNENETPNDFVNAADLAL 336 Query: 324 YRAKLGGRNKV 334 +RAK GRN+V Sbjct: 337 FRAKSEGRNRV 347 >RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 177 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 96/179 (53%), Gaps = 17/179 (9%) Query: 159 GTDGLTGIHNRRHFDEHYAQTLQRVGKTGGTLSLFMVDVEXAACGKDGRDAVADFFKQYN 218 TD LTG+ NRR DE +R + LS+ M+DV D FK YN Sbjct: 13 ATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDV--------------DHFKAYN 58 Query: 219 DHYGHGPGDQVLKRVAAALQGQLQRPGDLLARYGGEEFILLMEGLSPRQAAEVAEALRET 278 DHYGH GD L+ VA +Q L+RPGDL ARYGGEEF +++ G A VAE +R Sbjct: 59 DHYGHPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRA 118 Query: 279 VYALAEPHAKSLVAHRVTISVGVCTRAVQEGMDGR--LLMSAADAALYRAKLGGRNKVV 335 + L PHA+S + +T+S+G + + R L AADA LYRAK GRN+ + Sbjct: 119 ILVLNIPHARS-ASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRTM 176 >all2874 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Nos Nostoc sp. PCC 7120 Length = 330 Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 105/189 (55%), Gaps = 14/189 (7%) Query: 144 EKMLQSHSDVLKRQVGTDGLTGIHNRRHFDEHYAQTLQRVGKTGGTLSLFMVDVEXAACG 203 ++ L++ + L+R V D LT + NRR F+E+ AQ QR+ + LSL + DV Sbjct: 133 QQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDV------ 186 Query: 204 KDGRDAVADFFKQYNDHYGHGPGDQVLKRVAAALQGQLQRPGDLLARYGGEEFILLMEGL 263 DFFK YND YGH GD+ L+ VA A++ + RP D++ARYGGEEF +++ Sbjct: 187 --------DFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRT 238 Query: 264 SPRQAAEVAEALRETVYALAEPHAKSLVAHRVTISVGVCTRAVQEGMDGRLLMSAADAAL 323 P A +A A+ V L H S VTIS GV T D + +++AAD AL Sbjct: 239 YPDGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRAL 298 Query: 324 YRAKLGGRN 332 Y+AK+ GR+ Sbjct: 299 YQAKMTGRD 307