BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0018.p         (206 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0613 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...   137   2e-32
CC1190 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    67   2e-11
BH2958 [K] COG1309 Transcriptional regulator Bha Bacillus halodu...    67   2e-11
DR2148 [K] COG1309 Transcriptional regulator Dra Deinococcus rad...    65   9e-11
Rv3208 [K] COG1309 Transcriptional regulator Mtu Mycobacterium t...    61   2e-09

>RSp0613 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 215

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 4/190 (2%)

Query: 9   YDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLMHICEDHID 68
           ++ +RE++++ AA  FA + +   SMN++A ACG SK+ LYHY+  K  +L  + + +  
Sbjct: 20  FELRRESVLDTAAEAFAADSYASVSMNQIAAACGGSKSRLYHYYEGKEAILFDLLDRYTR 79

Query: 69  RLCALVD----EVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGDQKRI 124
           RL  LV+    +     L     L LLI+ F+ EY  ++  H  L  DV++L P  +  I
Sbjct: 80  RLADLVERAERDALHARLSARATLHLLIRTFLAEYATSRTRHVALLNDVKYLSPEQRDII 139

Query: 125 LTGERKVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHERMAVV 184
           L  ER+VV AV   + A  P         P+ M++FGM+NW F WLKPDG L++E  A +
Sbjct: 140 LAREREVVAAVGRQLAAAYPGKVDDANRTPVTMMVFGMMNWTFTWLKPDGPLSYEGYAEM 199

Query: 185 VSDLLFGGIG 194
           V ++L  G+G
Sbjct: 200 VIEMLENGLG 209


>CC1190 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 211

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 12  QRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRLC 71
           +R  I+  A  +F   G+ G ++ ++A A G+S  +LY +F DK Q+L+ I  D I+RL 
Sbjct: 22  RRGEILAAAEKIFIAEGYAGATIRKIADAVGVSSTALYMHFRDKDQILLEISNDAIERLL 81

Query: 72  ALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGDQ 121
            L  ++A Q +DP  R+RL+++ ++    D  N ++++     F   GD 
Sbjct: 82  DLNIQIAGQPIDPLSRVRLMLEAYMRFALDNPNTYQLV-----FCSTGDH 126


>BH2958 [K] COG1309 Transcriptional regulator Bha Bacillus halodurans
          Length = 215

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 8/188 (4%)

Query: 11  NQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLMHICEDHIDRL 70
           + +E IIE A  LF  +GF   +++ +    G SK   YH F  K +LL  I +  I  +
Sbjct: 4   STKERIIETALLLFEEHGFHAVTVDRIVQESGTSKGGFYHNFKSKDELLYTIHDSFITYV 63

Query: 71  CALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILTGERK 130
                E  ++   P  RL   ++ FV  +   +    V  ++  +L   D  + +  +R 
Sbjct: 64  LEKAREAYEKYETPAERLHATVRSFVMMFDFYRPHVTVFYQESLYL-SSDYFKDIKKKRD 122

Query: 131 VVKAVAEAMCAVRPELD----RSRMAKPL-AMLLFGMINWMFMWLKPDGELTHERMAVVV 185
             K +   +  V+  +D    R  +  P+ +M +FGMINW + W K  G  +   +A + 
Sbjct: 123 QYKQLMFRL--VKEGIDAGEFREEIPVPITSMAIFGMINWTYKWYKTSGMYSVAEIADIY 180

Query: 186 SDLLFGGI 193
           +DL+   +
Sbjct: 181 ADLVLHAV 188


>DR2148 [K] COG1309 Transcriptional regulator Dra Deinococcus radiodurans
          Length = 204

 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 10/135 (7%)

Query: 2   PRKRAA--GYDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLL 59
           P  RA+    +  RE I  +AA LF  +G+ G SM EVA A G++K +LYH++ADK  L 
Sbjct: 10  PSSRASFSSQETTRERIQTEAARLFVASGYHGVSMREVAEAVGVTKPALYHHYADKEALF 69

Query: 60  MHICEDHIDRLCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRV---LTEDVRFL 116
           + + +  +  L  LV+   QQ+      +R  +   + +  D   E RV   L  ++R +
Sbjct: 70  LAMLDGALATLARLVEHAGQQQ-----GIRAQLDTLIRDLLDTAPEQRVGLQLASELRHV 124

Query: 117 EPGDQKRILTGERKV 131
            P  +    T  R+V
Sbjct: 125 SPERRAAFETEYRRV 139


>Rv3208 [K] COG1309 Transcriptional regulator Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 228

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 3/190 (1%)

Query: 10  DNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLMHICEDHIDR 69
           D +R  ++  A+ +F   G+    M+E+A   G+SK  LY +F+ K +L + +   H++ 
Sbjct: 38  DERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFSSKLELYLAVLHRHVEN 97

Query: 70  LCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGDQKRILTGER 129
           L + V +      D   RL + +Q F +        +R++ E+    EP    ++     
Sbjct: 98  LVSGVHQALSTTTDNRQRLHVAVQAFFDFIEHDSQGYRLIFENDFVTEPEVAAQVRVATE 157

Query: 130 KVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGM-INWMFMWLKPDGELTHERMAVVVSDL 188
             + AV  A+ +    LD  R A+ +A+ L GM ++    WL  D  ++           
Sbjct: 158 SCIDAVF-ALISADSGLDPHR-ARMIAVGLVGMSVDCARYWLDADKPISKSDAVEGTVQF 215

Query: 189 LFGGIGAVSL 198
            +GG+  V L
Sbjct: 216 AWGGLSHVPL 225