BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0009.p         (136 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TP0981_2 Non COG                                                       96   2e-20
slr0302_3 [T] COG2199 FOG Syn Synechocystis                            96   2e-20
PA4332 [T] COG2199 FOG Pae Pseudomonas aeruginosa                      96   2e-20
aq_1455 [T] COG2199 FOG Aae Aquifex aeolicus                           94   7e-20
mlr1609 [T] COG2199 FOG Mlo Mesorhizobium loti                         93   2e-19

>TP0981_2 Non COG
          Length = 177

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 86/135 (63%), Gaps = 2/135 (1%)

Query: 1   LLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVL-PADALAARLGGDEFVILLQDVREE 59
           L++DID FKQ+ND HGH  GD +L+ ++ ++R    P D +A+R GG+EF+++L +    
Sbjct: 42  LMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCD-IASRYGGEEFMLMLSNNSSR 100

Query: 60  QVAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMALADAALYDAKRA 119
           + AH+ E++R+A   +          V++S GV+ Y     + E+L+  AD+ALY AK+ 
Sbjct: 101 EAAHVAERIRVATEQLTIPYHEVSIRVTVSAGVAEYLPNQESAETLIKRADSALYQAKQN 160

Query: 120 GRDRLIVSPAHITAA 134
           GR+++++S  ++ ++
Sbjct: 161 GRNKVVISEKNMCSS 175


>slr0302_3 [T] COG2199 FOG Syn Synechocystis
          Length = 180

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 1   LLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDEFVILLQDVREEQ 60
           L+ID+D+FK+ ND  GH AGD++L ++ TLL+  +    +A R GG+E  I+L D   E+
Sbjct: 47  LMIDVDHFKRFNDSLGHDAGDRILASIGTLLKNNIRTSDVACRYGGEEITIILPDATLEE 106

Query: 61  VAHLGEQLRMAFSHVA-RKGVATPEAVSLSVGVSLYTKPALALESLMALADAALYDAKRA 119
            +   E LR A + +          +V+ S GV+ Y       + ++ +AD ALYDAK+A
Sbjct: 107 ASQKAEFLRQAIAEMKIEYSGKIVNSVTASFGVACYPDHGETGQEIIQIADKALYDAKQA 166

Query: 120 GRDRLIVSPAHITA 133
           GR+R+IV+P  ++ 
Sbjct: 167 GRNRVIVAPKEVST 180


>PA4332 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 487

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 2   LIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDEFVILLQDVREEQV 61
           LID+D+FK++ND HGHAAGD++L+  + + R  L    + AR GG+EFV+LL     EQ+
Sbjct: 358 LIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQL 417

Query: 62  AHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMALADAALYDAKRAGR 121
               E+LR+AF      GV T + +SLSVG++L       L+  +  AD ALY AKR GR
Sbjct: 418 ESCCERLRLAFQQAEPVGV-TVDTLSLSVGMTLLYADD-DLDEALQRADQALYRAKRGGR 475

Query: 122 DRL 124
           +R 
Sbjct: 476 NRC 478


>aq_1455 [T] COG2199 FOG Aae Aquifex aeolicus
          Length = 236

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 1   LLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDEFVILLQDVREEQ 60
           L ID+DNFK+VND +GHA GD++L+ ++ ++RE +    +A R+GGDEF+I+L +   E 
Sbjct: 74  LFIDLDNFKEVNDRYGHAEGDRVLKDIARIIRESIRGTDIAVRIGGDEFLIILPNSNIET 133

Query: 61  VAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMALADAALYDAKRAG 120
              +GE+++ A     +        +S S G+S+Y      LE L+ LAD+ +Y  KR  
Sbjct: 134 AKRVGERIKNAIEETFK-----DYGISASYGISIYPNEGETLEELINLADSRMYQMKREK 188

Query: 121 R 121
           +
Sbjct: 189 K 189


>mlr1609 [T] COG2199 FOG Mlo Mesorhizobium loti
          Length = 447

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 6/130 (4%)

Query: 1   LLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDEFVILLQDVREEQ 60
           L+ID+D+FK +ND  GHA GDK+L+ +++LL EV  A     R+GG+EF IL    R   
Sbjct: 307 LIIDVDHFKSINDRFGHAEGDKVLKGVASLLSEVASAGDQVFRIGGEEFAIL--SSRPHP 364

Query: 61  VAHL-GEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMALADAALYDAKRA 119
           VA L GE +R A   V    VA+   +++S GVS  ++    L  L ALAD  LY AK  
Sbjct: 365 VARLFGESIRHA---VKASAVASRFELTVSAGVSTVSETTRCLADLFALADQRLYKAKST 421

Query: 120 GRDRLIVSPA 129
           GRDR++  PA
Sbjct: 422 GRDRVVGEPA 431