BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0004.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl2816 [K] COG1522 Transcriptional regulators Atu Agrobacterium...   135   4e-32
SMa1867 [K] COG1522 Transcriptional regulators Sme Sinorhizobium...   134   5e-32
mlr7030 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium...   134   5e-32
SMb20425 [K] COG1522 Transcriptional regulators Sme Sinorhizobiu...   120   8e-28
mll7129 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium...   113   1e-25

>AGl2816 [K] COG1522 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 215

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 88/122 (72%)

Query: 1   VELAEAVNLSPSPCLTRTKRMEETGVIAGYAARVALDKLGSHVVVFSEITLGSHRPADFR 60
           VELAE VNLSPSPCL R K+++  G I GY+A++ ++KLG  + VF+EITL +HR  DF 
Sbjct: 80  VELAELVNLSPSPCLMRVKKLQSEGYIEGYSAQININKLGQTLTVFTEITLKNHRQIDFA 139

Query: 61  KFEQGAAKYAEIVECYNVSGGYDYLLKIVSPTVALFQELMERLLEDEIGIEKFASRIVLR 120
           +F     K  ++VEC+ VSGGYDYLLK V+  +  +Q +MERL + ++GI+K+ S +VL+
Sbjct: 140 RFLGVVEKIDQVVECHLVSGGYDYLLKFVTSGIVEYQSIMERLTDMDVGIDKYFSFVVLK 199

Query: 121 HP 122
            P
Sbjct: 200 SP 201


>SMa1867 [K] COG1522 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 158

 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 87/122 (71%)

Query: 1   VELAEAVNLSPSPCLTRTKRMEETGVIAGYAARVALDKLGSHVVVFSEITLGSHRPADFR 60
           VELAE VNLSPSPCL R K+++  G I GY+A++ + KLG  + VF+EITL +HR  DF 
Sbjct: 23  VELAELVNLSPSPCLMRVKKLQSEGYIDGYSAQINVGKLGQTLTVFTEITLKNHRQIDFA 82

Query: 61  KFEQGAAKYAEIVECYNVSGGYDYLLKIVSPTVALFQELMERLLEDEIGIEKFASRIVLR 120
           +F     K  +++EC+ VSGGYDYLLK V+  +  +Q +MERL + ++GI+K+ S +VL+
Sbjct: 83  RFLAAIEKVDQVIECHLVSGGYDYLLKFVTAGINEYQTIMERLTDMDVGIDKYFSFVVLK 142

Query: 121 HP 122
            P
Sbjct: 143 SP 144


>mlr7030 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 169

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 88/122 (72%)

Query: 1   VELAEAVNLSPSPCLTRTKRMEETGVIAGYAARVALDKLGSHVVVFSEITLGSHRPADFR 60
           VELAE V+LSPSPCL R KR++  G I GY+A++ + KLG  + VF+EITL +HR  DF 
Sbjct: 34  VELAELVHLSPSPCLMRVKRLQSEGYIEGYSAQINIGKLGQTLTVFTEITLKNHRQVDFA 93

Query: 61  KFEQGAAKYAEIVECYNVSGGYDYLLKIVSPTVALFQELMERLLEDEIGIEKFASRIVLR 120
           +F     K  +++EC+ VSGGYDYL+K V+  +A +Q +MERL + +IGI+K+ S +VL+
Sbjct: 94  RFLAVVEKIDQVIECHLVSGGYDYLMKFVTAGIAEYQTIMERLTDMDIGIDKYFSFVVLK 153

Query: 121 HP 122
            P
Sbjct: 154 SP 155


>SMb20425 [K] COG1522 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 164

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 85/127 (66%)

Query: 3   LAEAVNLSPSPCLTRTKRMEETGVIAGYAARVALDKLGSHVVVFSEITLGSHRPADFRKF 62
           LAE   LSP+PC  R +++E+ G++ GY ARVAL ++     V  E+TLG+HR ADF +F
Sbjct: 25  LAEKAGLSPTPCWMRLRKLEKAGIVTGYHARVALRRVAPVASVMMEVTLGNHRQADFDRF 84

Query: 63  EQGAAKYAEIVECYNVSGGYDYLLKIVSPTVALFQELMERLLEDEIGIEKFASRIVLRHP 122
           E+  A   EIV C++V GG DY+LKI++  +  +Q L++ LLE E+GI+++ + IV +  
Sbjct: 85  ERAIAAIPEIVACWSVGGGVDYILKIMTADIDAYQRLVDGLLERELGIDRYFTYIVTKTV 144

Query: 123 YEQRVEP 129
            E+ V P
Sbjct: 145 KEETVLP 151


>mll7129 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 163

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%)

Query: 3   LAEAVNLSPSPCLTRTKRMEETGVIAGYAARVALDKLGSHVVVFSEITLGSHRPADFRKF 62
           LAE V LSP+PC  R +++E+ G+++GY AR+A+  +     V  E+TL SHR ADF +F
Sbjct: 28  LAEQVGLSPTPCWMRLRKLEKAGIVSGYHARIAMRVVAPVATVLMEVTLASHRQADFDRF 87

Query: 63  EQGAAKYAEIVECYNVSGGYDYLLKIVSPTVALFQELMERLLEDEIGIEKFASRIVLRHP 122
           E+      EIV C++V GG DY+LK+++  +  +Q L++ LL+ EIGI+++ + IV +  
Sbjct: 88  ERVIRDIPEIVACWSVGGGVDYVLKVMARDIDAYQRLVDGLLDREIGIDRYFTYIVTKTV 147

Query: 123 YEQRVEPV 130
            E+   P+
Sbjct: 148 KEEIALPI 155