BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0180.p         (151 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01370 [T] COG3706 Response regulator containing a CheY-like r...   126   2e-29
BS_yhcK_2 [T] COG2199 FOG Bsu Bacillus subtilis                       119   2e-27
RP237 [T] COG3706 Response regulator containing a CheY-like rece...   114   5e-26
BMEII0660 [T] COG3706 Response regulator containing a CheY-like ...   114   7e-26
PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa                     113   1e-25

>SMc01370 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Sme Sinorhizobium meliloti
          Length = 455

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 6/140 (4%)

Query: 11  LSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHAT 70
           LS    DID FKRVND  GH +GDDVLRE A R++  +R +D   RFGGEEFVV++   T
Sbjct: 322 LSICITDIDRFKRVNDTHGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTT 381

Query: 71  RDDAARIAERIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAA 130
            + AA +AER+R  + SRG  I  +   L ++AS+G A+L      RP  +  +A+LK A
Sbjct: 382 PEMAAIVAERLRLAVESRGFDIPQAATVLNVTASLGIATL------RPHGDTAEALLKRA 435

Query: 131 DQALYQAKEAGRNRVMLAPA 150
           D ALYQAK  GRNRV+ A A
Sbjct: 436 DMALYQAKNGGRNRVVAAAA 455


>BS_yhcK_2 [T] COG2199 FOG Bsu Bacillus subtilis
          Length = 179

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 88/138 (63%), Gaps = 7/138 (5%)

Query: 11  LSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHAT 70
            + +++DIDHFK +NDQ+GH  GD VL+E+  R+K+ +R +D   R GGEEF VLL + +
Sbjct: 45  FALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAVLLPNCS 104

Query: 71  RDDAARIAERIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAA 130
            D AARIAERIR+ +    +++    D L ++ S+GAA   P +  +P      ++   A
Sbjct: 105 LDKAARIAERIRSTVSDAPIVLTNG-DELSVTISLGAAHY-PNNTEQPG-----SLPILA 157

Query: 131 DQALYQAKEAGRNRVMLA 148
           DQ LY+AKE GRNRV  +
Sbjct: 158 DQMLYKAKETGRNRVCFS 175


>RP237 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Rpr Rickettsia prowazekii
          Length = 450

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 7/146 (4%)

Query: 1   VARSQRDRSALSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGE 60
           + ++ ++   L  L  DID+FK VND +GHQ+GD VL  V+  +K  LR++D + RFGGE
Sbjct: 310 IEKANKENIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTTVSRILKNTLRVTDLIARFGGE 369

Query: 61  EFVVLLTHATRDDAARIAERIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAA 120
           EF +LLT      A   AER+R  I      IEG  +PL+ + SIG              
Sbjct: 370 EFTILLTDIDISKAIETAERVRVKIEYMDFYIEGQIEPLKKTISIGVTEYKKE------- 422

Query: 121 EVKQAMLKAADQALYQAKEAGRNRVM 146
           E  ++ +K AD+A+Y+AK  G+N+V+
Sbjct: 423 ESIESFIKRADKAMYEAKTTGKNKVV 448


>BMEII0660 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Bme Brucella melitensis
          Length = 461

 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 94/150 (62%), Gaps = 6/150 (4%)

Query: 1   VARSQRDRSALSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGE 60
           + R+   +  LS + ID+DHFK+VN+Q+GH +GD VLRE + R+++ +R  D + R+GGE
Sbjct: 318 LTRAIERKQPLSIIMIDLDHFKQVNEQYGHGAGDHVLREFSGRLRRNIRGMDLISRYGGE 377

Query: 61  EFVVLLTHATRDDAARIAERIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAA 120
           EFVV+L    R  A  +AER+R  +     +++  +    ++ S+G A+L      RPA 
Sbjct: 378 EFVVVLPDTDRQAAFNVAERVRGIVAEAPFVLDDGKRRASLTVSVGVAAL------RPAG 431

Query: 121 EVKQAMLKAADQALYQAKEAGRNRVMLAPA 150
           +  +A+   A  AL QAK++GRNR++L+ A
Sbjct: 432 DSLEALFTRATDALIQAKQSGRNRIVLSAA 461


>PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 671

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 90/148 (60%), Gaps = 9/148 (6%)

Query: 1   VARSQRDRSALSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGE 60
           VAR  RD   L    +DIDHFKR+ND FGH +GD VL+ +A  ++K LR +D + RFGGE
Sbjct: 533 VARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGE 592

Query: 61  EFVVLLTHATRDDAARIAERIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAA 120
           EFVVLL   + +   ++ ER+RA I +     +G  +PL I+ S G  +           
Sbjct: 593 EFVVLLPATSLEAGRQLLERLRAAIAACPFHFKG--EPLSITCSAGITAFE-------GN 643

Query: 121 EVKQAMLKAADQALYQAKEAGRNRVMLA 148
           E  +A+ + ADQALY+AK AGR+R+ +A
Sbjct: 644 EAGEAVFERADQALYRAKRAGRDRLEVA 671