BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0179.p         (233 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1395 [GER] COG0697 Permeases of the drug/metabolite transport...    94   3e-19

>RSc1395 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 306

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 10/183 (5%)

Query: 12  LLLNTFIWGLSWTGTRALEGMGLHPVWATAAIFSGCALLLLTLRHRELPLL---WRHPAL 68
           +L+   +WG+SW   R L G GL  + A+A   +   ++      R        W  PAL
Sbjct: 24  ILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAATIVAAVALRRHFHTFRWSWLIPAL 83

Query: 69  LGVGLATGLTNASFNMAVAYGDVVRVILLFYLMPVWTVILARLVLHEAITPRSLARVALG 128
              GL  G+TNA F  +  +G V+RV+LLFYL P+WT +LARL LHE +  R  A + + 
Sbjct: 84  ---GLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALLARLWLHERLGARGAALLVVA 140

Query: 129 LGGAFIVLYQPRLGLPLPQSLPDWMAVASGLLFAVTNVLLR----RLHGFSDGTRAVAML 184
           L GA ++L     G+P P +  +W  V +GL FA  NVL R    RL       R V + 
Sbjct: 141 LCGAGLMLGAGNAGMPWPGTAAEWSGVVAGLAFACNNVLARLVGQRLPTMRAELRTVVVF 200

Query: 185 VGS 187
            GS
Sbjct: 201 AGS 203