BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0157.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralst...   235   4e-62
PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudo...   140   2e-33
BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Bruc...   119   3e-27
AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrob...   117   1e-26
mlr7495 [O] COG3175 Cytochrome oxidase assembly factor Mlo Mesor...   110   2e-24

>RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralstonia
           solanacearum
          Length = 202

 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 132/163 (80%)

Query: 1   MFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKTRTITVEF 60
           M  KL VV V+MFGFGYA++P+Y+KICE+T +N LT +D+   A  NTQ+D+ RT+TVEF
Sbjct: 25  MLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEF 84

Query: 61  DGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSAAFFKKVE 120
           D N+QGP+RFRP   SM+VHPGE+ Q+ YEVVN + R+V AQAIPSYAP Q+  FFKK+E
Sbjct: 85  DSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIE 144

Query: 121 CFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEI 163
           CFCF QQTL  N++++MPVVF IDP LPK+V TITLSYTFFEI
Sbjct: 145 CFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEI 187


>PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudomonas
           aeruginosa
          Length = 184

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 4   KLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKTRTITVEF--D 61
           +LL+V VLMF FG+AL+P+Y  +C   G+N    K          Q+D  R + V+F   
Sbjct: 14  RLLLVTVLMFAFGFALVPLYDVMCRALGIN---GKTAGSAYSGEQQVDVGREVKVQFMTS 70

Query: 62  GNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSAAFFKKVEC 121
            N    W FR     + VHPG + Q+ +   N   + + AQAIPS AP ++AA+F K EC
Sbjct: 71  NNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTEC 130

Query: 122 FCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEINGK 166
           FCFTQQ L P ++ +MPV F +D  LPK+V  +TL+YT F+I  +
Sbjct: 131 FCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITAR 175


>BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Brucella
           melitensis
          Length = 237

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 12/162 (7%)

Query: 10  VLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKTRTITVEFDGN-AQG-P 67
           V M G  YA +P+YR  C+VTG    T +   VE  ++T +DKT  I V FD N A G P
Sbjct: 63  VCMIGAAYASVPLYRIFCQVTGYGGTTQR---VEQYSDTILDKT--IKVRFDANIANGLP 117

Query: 68  WRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSAAFFKKVECFCFTQQ 127
           W F+P    + V  GE T + YE  N        +A  + AP ++ A+F KVECFCFT  
Sbjct: 118 WDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRASFNVAPGRAGAYFNKVECFCFTDN 177

Query: 128 TLGPNQAKQMPVVFYIDPKLP-----KEVTTITLSYTFFEIN 164
           TL P +  ++PVVF++DP+       K+V TITLSYTFF I+
Sbjct: 178 TLKPGEDLELPVVFFVDPEFVNDPDLKDVKTITLSYTFFPID 219


>AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 205

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 16/170 (9%)

Query: 3   RKLLVVAVL----MFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKTRTITV 58
           R +LV+ ++    M G  YA +P+Y   C VTG N  T +   VE  ++  +DKT  I V
Sbjct: 19  RSILVLCLVFFCAMIGMAYAAVPLYSLFCRVTGYNGTTQR---VEQYSDVILDKT--INV 73

Query: 59  EFDGNAQG--PWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSAAFF 116
            FD N      W FRP    ++   GE  +VT++  N  P      A+ +  P+++ A+F
Sbjct: 74  TFDANTSNGLNWDFRPVDKMVKPKIGETIKVTFKATNRSPVATTGTAVFNVTPMEAGAYF 133

Query: 117 KKVECFCFTQQTLGPNQAKQMPVVFYIDPKLP-----KEVTTITLSYTFF 161
            KVECFCFT+ TL P +  +MPVVF++DP +      K V T+TLSYTF+
Sbjct: 134 NKVECFCFTETTLQPGETLEMPVVFFVDPDIATARETKSVHTLTLSYTFY 183


>mlr7495 [O] COG3175 Cytochrome oxidase assembly factor Mlo Mesorhizobium
           loti
          Length = 206

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 12  MFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAP-ANTQIDKTRTITVEFDGNAQG-PWR 69
           M G  YA +P+Y+  C+ TG    T +   VE   A   +D  R ITV FD N  G PW 
Sbjct: 25  MIGMAYAAVPLYKMFCQATGYGGTTQR---VEKQYAGRVLD--REITVRFDANIAGVPWE 79

Query: 70  FRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSAAFFKKVECFCFTQQTL 129
           F+P   SM +  GE  Q  Y+  N   R V  +A  +  P  +  +F KVECFCFT  +L
Sbjct: 80  FQPVQRSMTMKIGETVQAHYQATNKFDRPVTGRATFNVQPELAGPYFNKVECFCFTDTSL 139

Query: 130 GPNQAKQMPVVFYIDPKLP-----KEVTTITLSYTFFEI 163
            P +   MPV+FY+DP +      K+V TITLSYT F +
Sbjct: 140 KPGETVDMPVLFYVDPDIVNVPELKDVKTITLSYTMFPV 178