BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0151.p         (201 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1739 [R] COG4120 ABC-type uncharacterized transport system, p...   253   2e-67
PA3837 [R] COG4120 ABC-type uncharacterized transport system, pe...   226   3e-59
BMEI0013 [R] COG4120 ABC-type uncharacterized transport system, ...   171   7e-43
SMc03829 [R] COG4120 ABC-type uncharacterized transport system, ...   161   1e-39
VC1102 [R] COG4120 ABC-type uncharacterized transport system, pe...   159   5e-39

>RSc1739 [R] COG4120 ABC-type uncharacterized transport system, permease
           component Rso Ralstonia solanacearum
          Length = 303

 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/171 (77%), Positives = 156/171 (91%)

Query: 1   MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60
           MSL++LLGALEIGL+FSLVALGVLISFRIL FPDLTVDGSF +GGAV+AT+IA G +PF+
Sbjct: 1   MSLFSLLGALEIGLVFSLVALGVLISFRILNFPDLTVDGSFTMGGAVSATLIAGGHDPFM 60

Query: 61  ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120
           AT   LLAG +AGFIT WLNVRLKIMDLLASILMMIALYS+NLR+MG+PNVPLISE T+F
Sbjct: 61  ATLCGLLAGGVAGFITGWLNVRLKIMDLLASILMMIALYSVNLRIMGRPNVPLISEATVF 120

Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMA 171
           ++LQPD +PDYV+RP++L VVV  AKLLLDWFFS+++GL++RATGAN RMA
Sbjct: 121 TVLQPDWMPDYVARPVLLAVVVVVAKLLLDWFFSTQVGLSLRATGANPRMA 171


>PA3837 [R] COG4120 ABC-type uncharacterized transport system, permease
           component Pae Pseudomonas aeruginosa
          Length = 296

 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 149/171 (87%)

Query: 1   MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60
           MSL++L GALEIGLIFSLVALGV ISFR+L FPDLTVDGSFPLGGAV AT+IA G++P+ 
Sbjct: 1   MSLFSLFGALEIGLIFSLVALGVFISFRLLRFPDLTVDGSFPLGGAVCATLIALGWDPYS 60

Query: 61  ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120
           AT  A  AGALAG  T  LNV+LKIMDLLASILMMIALYSINLR+MGKPNVPLI+EPT+F
Sbjct: 61  ATLAATAAGALAGLATGLLNVKLKIMDLLASILMMIALYSINLRIMGKPNVPLIAEPTLF 120

Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMA 171
           ++LQP+ + DYV RPL+L+ +V  AKLLLDWFF+++ GLA+RATG+N RMA
Sbjct: 121 TLLQPEWLSDYVFRPLLLVFIVIAAKLLLDWFFTTQKGLAIRATGSNPRMA 171


>BMEI0013 [R] COG4120 ABC-type uncharacterized transport system, permease
           component Bme Brucella melitensis
          Length = 294

 Score =  171 bits (434), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 128/171 (74%)

Query: 1   MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60
           MS     GA+E+GL+F+ VA+GV ++FR+L FPDLTVDGSFPLG AV   +I AG+NP+L
Sbjct: 1   MSQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVTGVLILAGYNPWL 60

Query: 61  ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120
           A  +A++AGA AG +TA LNVR +I++LLASIL MIAL+S+NLRVMG+PN+ LI++ T+ 
Sbjct: 61  AAAIAMVAGAAAGLVTATLNVRFRILNLLASILTMIALFSVNLRVMGRPNIALINQDTML 120

Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMA 171
           +      IP+Y  RPL L V+V     ++  F  S++GLAMRATGAN RMA
Sbjct: 121 TPFFGHGIPEYYVRPLFLFVLVAITVFVVWRFLESDMGLAMRATGANPRMA 171


>SMc03829 [R] COG4120 ABC-type uncharacterized transport system, permease
           component Sme Sinorhizobium meliloti
          Length = 283

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 129/173 (74%), Gaps = 1/173 (0%)

Query: 10  LEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFLATFVALLAG 69
           +E+GL+++ VA+GV ++FR+L FPDLTVDGSFPLG AV A +I AG NP+LA  VA++AG
Sbjct: 1   MELGLVYAFVAVGVFLAFRVLDFPDLTVDGSFPLGAAVTAVLIIAGVNPWLAAAVAMVAG 60

Query: 70  ALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIFSILQPDSIP 129
           A AG +TA LNVR KI++LLASIL MIAL+S+NLRVMGKPNV LI+  T+ S      + 
Sbjct: 61  AAAGMVTALLNVRFKILNLLASILTMIALFSVNLRVMGKPNVALINADTMLSPFYGLGLR 120

Query: 130 DYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMASWAQRVLSCHR 182
           D+  RPL + ++V  A +L+  F  S+ GLAMRATGANARMA  AQ V +  +
Sbjct: 121 DFYVRPLFVGILVAFAVVLVWRFLESDAGLAMRATGANARMAR-AQGVDTSRQ 172


>VC1102 [R] COG4120 ABC-type uncharacterized transport system, permease
           component Vch Vibrio cholerae
          Length = 327

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 92/172 (53%), Positives = 128/172 (74%), Gaps = 1/172 (0%)

Query: 1   MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60
           MS +   GALE+GL++ LVALGV ++FR+L FPDL+VDGSFP+G AVAAT I AG NP++
Sbjct: 14  MSAFAFFGALELGLLYGLVALGVYLTFRVLDFPDLSVDGSFPMGAAVAATAIVAGINPWV 73

Query: 61  ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120
           AT +A+LAGA  G++TA+L+VR  I+ LLASIL MIA +SIN+R+MG+PN+ L+ E TI 
Sbjct: 74  ATGLAILAGAATGWVTAFLSVRCGILHLLASILTMIAAFSINIRIMGRPNLALLGEDTIL 133

Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMAS 172
           +  +    P  + RPL++ V+V  + LL+    +S+ GL +RATG NARM +
Sbjct: 134 TPFEALGDPVLI-RPLVVAVLVVISALLVIRLLNSDFGLGLRATGVNARMVA 184