BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0115.p (203 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation ... 214 1e-55 PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation o... 208 6e-54 CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation o... 139 5e-33 VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation ... 134 9e-32 SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation... 128 8e-30 >RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Rso Length = 233 Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 103/182 (56%), Positives = 142/182 (78%), Gaps = 4/182 (2%) Query: 12 ASYRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFMLPD 71 +++ Y+D F+ K+LPGEY+ T ED+M+VTVLGSCVSAC+RD++ G+GGMNHFMLP Sbjct: 38 STHAYYDTTFSRRAMKVLPGEYYVTTEDLMLVTVLGSCVSACVRDKLLGIGGMNHFMLPS 97 Query: 72 GGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVGERN 131 E++S +S SMRYGT+AMEVL+N + +AGARRE+LE KVFGG AVL GM+ ++VGERN Sbjct: 98 RN-ESESILSPSMRYGTHAMEVLLNQLYRAGARREHLEIKVFGGAAVLAGMSTLDVGERN 156 Query: 132 AAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKD--AAADLASREREYAS 189 FV +L +E + V A+DL D+ PRKV+F P TG+++V+K++ +AA+L S E +YAS Sbjct: 157 GKFVLEFLRSEGLPVAAKDLFDVHPRKVYFVPSTGQIMVRKLRSQGSAAELDS-EAQYAS 215 Query: 190 KL 191 KL Sbjct: 216 KL 217 >PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Pae Length = 200 Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 102/190 (53%), Positives = 138/190 (72%), Gaps = 3/190 (1%) Query: 15 RYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFMLPDGGG 74 RY+D F CD K+LPGEYF +GED++IVTVLGSCVS CLRD ++G+ GMNHFMLP+ G Sbjct: 13 RYYDPYFACDAVKLLPGEYFASGEDLVIVTVLGSCVSVCLRDPLNGIAGMNHFMLPERGL 72 Query: 75 EADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVGERNAAF 134 D P S S RYG++AME+LIN +L GA RE L+ KVFGGG+VLR ++A +G+RN F Sbjct: 73 GGD-PASPSARYGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQISAA-IGQRNVEF 130 Query: 135 VKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAAD-LASREREYASKLQA 193 +YL+ E+I ++A D+ + +PRK++FFPR G+VLVK + + D + RER+Y ++ Sbjct: 131 TLDYLATERIPLLASDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRERDYRRRIDR 190 Query: 194 KPVGGEIDLF 203 GG IDLF Sbjct: 191 NADGGPIDLF 200 >CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Ccr Length = 187 Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 11/191 (5%) Query: 16 YHDRAFNCDTAKILPGEYFYTGE-DMMIVTVLGSCVSACLRDRVSGVGGMNHFMLPDGG- 73 +HD + GE T + ++++ TVLGSC++AC+RD SGVGGMNHF+LPD G Sbjct: 5 HHDDPERAVKVHVTQGESHVTADPNVVMTTVLGSCIAACIRDPQSGVGGMNHFLLPDSGD 64 Query: 74 GEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVGERNAA 133 G D ++RYG YAMEVLIND+LK GARRE LE K+FGG + G++ +VG NAA Sbjct: 65 GRRDG---DAVRYGAYAMEVLINDLLKRGARRERLEAKIFGGAKLFDGLS--DVGASNAA 119 Query: 134 FVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAADLASRE-REYASKLQ 192 F + +L E I +V+ + R+V F+P +G+V + + A D A ++ R Sbjct: 120 FAERFLRDEGIPIVSSSTGGVSARRVEFWPASGRVRQRLV---AVDNAPQDVRRPTPPPM 176 Query: 193 AKPVGGEIDLF 203 G++DLF Sbjct: 177 PAVASGDVDLF 187 >VCA1090 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Vch Length = 233 Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 114/197 (57%), Gaps = 9/197 (4%) Query: 14 YRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFMLP--- 70 YR++ + + K++PG + T + +I T LGSCVSAC D VGGMNHF+LP Sbjct: 38 YRFNHPSDHRHWVKVMPGGVYATSDQEIIHTGLGSCVSACAWDIEMKVGGMNHFLLPFNN 97 Query: 71 ---DGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNV 127 + +S S RYG YAMEVLIN +L GA RE L+ K+F GGA L G ++ V Sbjct: 98 QFESQHWHPQALLSDSSRYGCYAMEVLINRLLSMGAERERLKFKLF-GGAHLMGYQSL-V 155 Query: 128 GERNAAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAADLASRERE- 186 GE+N FV Y EK+ VVA+DL PRK+ F P+TG+ VK+I ++A ++ E Sbjct: 156 GEKNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRIGFSSAHAIKQDEEL 215 Query: 187 YASKLQAKPVGGEIDLF 203 Y + + +++LF Sbjct: 216 YQHSIDKQIPSDDVELF 232 >SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Sme Length = 183 Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 66/143 (46%), Positives = 95/143 (66%), Gaps = 8/143 (5%) Query: 28 ILPGEYFYTGE-DMMIVTVLGSCVSACLRDRVSGVGGMNHFMLPDGGGEADSPVSA--SM 84 ++ GE+ + D+++ T+LGSCV+AC+RD +GVGGMNHF+LP G A SP S + Sbjct: 12 VIQGEFKVVNDPDIVLSTILGSCVAACMRDPAAGVGGMNHFLLP---GSATSPSSGADAT 68 Query: 85 RYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVGERNAAFVKNYLSAEKI 144 RYG + ME+LIN +LK GARR+ LE K+FGG + + NVGE+NAAF + +L E I Sbjct: 69 RYGVHLMELLINGLLKQGARRDRLEAKIFGGARTIARFS--NVGEQNAAFARQFLMDEGI 126 Query: 145 RVVAEDLNDIWPRKVHFFPRTGK 167 R+V E RK+ ++P +G+ Sbjct: 127 RIVGESTGGDHGRKLEYWPSSGR 149