BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0114.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF2763 [K] COG3636 Predicted transcriptional regulator Xfa Xylel...    93   3e-19
CC3037 Non COG                                                         91   7e-19
HI1420 [K] COG3636 Predicted transcriptional regulator Hin Haemo...    71   1e-12
RSp0076 [K] COG3636 Predicted transcriptional regulator Rso Rals...    69   5e-12
XF1596 [K] COG3636 Predicted transcriptional regulator Xfa Xylel...    65   6e-11

>XF2763 [K] COG3636 Predicted transcriptional regulator Xfa Xylella
           fastidiosa 9a5c
          Length = 102

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 16  FDPANYLDSKETITAYLQTALEENDPDFLMAALNDVIRAQGIAEVAGKAGLGRESLYKTL 75
           FD A YL S+E + AYL   LEENDP  L AAL D+ R++G++++A  +G+ RE LYK L
Sbjct: 15  FDAAEYLSSEEEVAAYLTAVLEENDPALLAAALGDIARSRGMSQIAKDSGITREGLYKAL 74

Query: 76  KPGAEPRLGTVLRLLGALDLRLSIAAPQ 103
           +PG+EPR  T+ R+  AL +RL +A P 
Sbjct: 75  RPGSEPRFDTISRVCTALGIRL-VAQPM 101


>CC3037 Non COG
          Length = 108

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 62/91 (68%)

Query: 11  VRISTFDPANYLDSKETITAYLQTALEENDPDFLMAALNDVIRAQGIAEVAGKAGLGRES 70
           V +S FDP   +D+ E +  +L  A +  D D++   L  + R++G+AEVA KAGLGRES
Sbjct: 2   VTLSRFDPVEMIDNAEAVAVFLADAFDTGDADYIQHMLGLIARSKGMAEVAEKAGLGRES 61

Query: 71  LYKTLKPGAEPRLGTVLRLLGALDLRLSIAA 101
           LYK LK GA PR  T+LR++ AL+L+L++ +
Sbjct: 62  LYKALKDGASPRFDTILRVVHALNLKLALVS 92


>HI1420 [K] COG3636 Predicted transcriptional regulator Hin Haemophilus
          influenzae
          Length = 97

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 56/88 (63%)

Query: 12 RISTFDPANYLDSKETITAYLQTALEENDPDFLMAALNDVIRAQGIAEVAGKAGLGRESL 71
          ++  FD A +L S+E I  YL   L+E++ + +++AL D+ RA+ ++++A  AG+ RE L
Sbjct: 4  QLKDFDVAEHLTSEEEIQLYLNEILQEDNIELILSALGDIARARNMSQIARDAGISREGL 63

Query: 72 YKTLKPGAEPRLGTVLRLLGALDLRLSI 99
          YK L     P   TV++++ AL+L+  +
Sbjct: 64 YKALSGTGNPTFATVMKVMKALNLQFQV 91


>RSp0076 [K] COG3636 Predicted transcriptional regulator Rso Ralstonia
          solanacearum
          Length = 99

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 2/93 (2%)

Query: 8  RKEVRISTFDPANYLDSKETITAYLQTALEE--NDPDFLMAALNDVIRAQGIAEVAGKAG 65
          ++ ++   +D A +L ++  I AYL   LEE  +DP F+  AL  V R++G+ ++A + G
Sbjct: 3  QRTIKTRPWDSAEHLRTEADIAAYLDACLEEAGDDPAFITHALGVVARSRGMTQLARETG 62

Query: 66 LGRESLYKTLKPGAEPRLGTVLRLLGALDLRLS 98
          + RE LYK L  G  P   TVL+++ AL +RL 
Sbjct: 63 MTREGLYKALSEGGNPSFATVLKVIRALGIRLH 95


>XF1596 [K] COG3636 Predicted transcriptional regulator Xfa Xylella
           fastidiosa 9a5c
          Length = 99

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 12  RISTFDPANYLDSKETITAYLQTALEENDPDFLMAALNDVIRAQGIAEVAGKAGLGRESL 71
           +++++DPA  L + + I  ++  A   NDP ++  AL  V RA+G+ ++A + GL RE L
Sbjct: 6   KLTSYDPAEDLTTDQAIADFMAAAFGTNDPAYVAHALGVVARAKGMTQIASQTGLSREQL 65

Query: 72  YKTLKPGAEPRLGTVLRLLGALDLRLSIAAPQG 104
           Y++      P L T L ++ AL + LS A P G
Sbjct: 66  YRSFSAEGNPTLRTTLAVMKALGIELS-AKPSG 97