BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0103.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1229 [K] COG2207 AraC-type DNA-binding domain-containing prote... 274 2e-73 AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing prot... 263 4e-70 mll3235 [K] COG2207 AraC-type DNA-binding domain-containing prot... 261 1e-69 yeaM [K] COG2207 AraC-type DNA-binding domain-containing protein... 234 2e-61 ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing protei... 232 6e-61 >PA1229 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 268 Score = 274 bits (701), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/249 (53%), Positives = 176/249 (70%), Gaps = 4/249 (1%) Query: 12 DPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGMWIVPPQSAVWI 71 DPD L AL++ ++ E P H HRKGQLVVA G +TC G+W+VP VWI Sbjct: 14 DPDALGQPALALQLEARHNDTEVPVHRHRKGQLVVACRGGITCTVPDGLWMVPAGFGVWI 73 Query: 72 PPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLAEQRQDYAPHER 131 P G+ HSNRVT +G++CFLF+ P AA +P CCTLALSPL++++I HL+ Q QDY PH+ Sbjct: 74 PGGIAHSNRVTANGKVCFLFVEPGAARLPSDCCTLALSPLVLELILHLSAQPQDY-PHDG 132 Query: 132 -TARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTVAEWGQRHAMS 190 ARLA VL+E LE + L+LP+P + LR IA L P DR+++AEW +R AMS Sbjct: 133 PLARLAGVLLELLEQAPTEQ--LYLPLPDNRGLRRIADELTRAPGDRASMAEWARRVAMS 190 Query: 191 ERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESVSAFITMFRNT 250 ERS AR V+ ETGM+FG+WR+Q+ +++ALQ L++G SVQR ++ LGYESVS+FI MFR Sbjct: 191 ERSLARMVRRETGMTFGQWRQQLQIIIALQQLSAGVSVQRTAEILGYESVSSFIGMFRKA 250 Query: 251 LGKPPARYM 259 LG PPARY+ Sbjct: 251 LGSPPARYV 259 >AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 263 bits (672), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 132/260 (50%), Positives = 178/260 (68%), Gaps = 10/260 (3%) Query: 3 TLYASLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGMWI 62 +L +L +HD + AAV ++R+ SQ+ERE P H HRKGQLV+ L G VTC GMW+ Sbjct: 11 SLSGALADHDLENSSAAVRSVRIDVSQNEREAPEHQHRKGQLVMPLRGGVTCRVPSGMWM 70 Query: 63 VPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLAEQ 122 VPP VW+P G+ HSN T + +L FLFI P AA +P++CCTL+LSPL+ ++I LA+Q Sbjct: 71 VPPHCGVWVPGGMLHSNVATANARLFFLFIEPGAADLPNRCCTLSLSPLVRELIIELADQ 130 Query: 123 RQDYAPHERTARLASVLVEELEHSQRHALP---LHLPVPQHSRLRAIARHLAEQPADRST 179 + A S L+ L S +P LHLP+ RL IA LA+ P+DRST Sbjct: 131 SE-------VATADSELMTTLLLSALSRMPVEHLHLPLTDEPRLARIASELADDPSDRST 183 Query: 180 VAEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYES 239 +A+W +R AMSE S AR VQ +TG++FGRWR+Q+ L++A++ LASG++VQ+VS DLGYES Sbjct: 184 MAQWARRVAMSENSLARLVQHQTGLTFGRWRQQLQLIIAIRSLASGATVQQVSGDLGYES 243 Query: 240 VSAFITMFRNTLGKPPARYM 259 VSAFITMF+ LG P+RY+ Sbjct: 244 VSAFITMFKKALGTSPSRYL 263 >mll3235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 268 Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/253 (52%), Positives = 177/253 (69%), Gaps = 7/253 (2%) Query: 9 IEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGMWIVPPQSA 68 ++ D D + A A+RV ++++ E H HRKGQLV AL G+VTC G+W+VPP Sbjct: 10 LDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCG 69 Query: 69 VWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLAEQRQDYAP 128 VW+P + HSN T + ++ F++I P AA +PD+CCTL++SPLL ++I L+ D AP Sbjct: 70 VWVPSRMQHSNIATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIELS----DCAP 125 Query: 129 HE-RTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTVAEWGQRH 187 + R A L SVL+ EL L HLP+ RL+ IA LA PADRST+AEWG+R Sbjct: 126 DDARCAFLGSVLLAELPDMPVQQL--HLPISSEPRLKRIAEALANDPADRSTLAEWGKRV 183 Query: 188 AMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESVSAFITMF 247 A+SE S AR V ETG+SFGRWR+Q+HL++A++ LASG+SVQRVS DLGYESV+AFITMF Sbjct: 184 ALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFITMF 243 Query: 248 RNTLGKPPARYMA 260 + LGKPPA+Y++ Sbjct: 244 KKALGKPPAQYLS 256 >yeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 273 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/255 (45%), Positives = 162/255 (63%), Gaps = 2/255 (0%) Query: 7 SLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGMWIVPPQ 66 +L ++PDR A A +H E +P H HRKGQL++ALHGA+TC +W+VPPQ Sbjct: 6 NLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQ 65 Query: 67 SAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLAEQRQDY 126 AVWIP GV HSN+VT + +LCFLFI P A +MP CCTL +SPL ++I LA + Sbjct: 66 YAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQ 125 Query: 127 APHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTVAEWGQR 186 T RL VL +EL + LHLPV H ++R + +A+ P + + +W Sbjct: 126 RAEPMTRRLIQVLFDELPQQPQQQ--LHLPVSSHPKIRTMVEMMAKGPVEWGALGQWAGF 183 Query: 187 HAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESVSAFITM 246 AMSER+ AR + ETG+SF +WR+Q+ L++ALQ L G +VQ+V+ LGY+S +AFITM Sbjct: 184 FAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITM 243 Query: 247 FRNTLGKPPARYMAQ 261 F+ LG+ P RY+A+ Sbjct: 244 FKKGLGQTPGRYIAR 258 >ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 273 Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 162/254 (63%), Gaps = 2/254 (0%) Query: 7 SLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGMWIVPPQ 66 +L ++PDR A A +H E +P H HRKGQL++ALHGA+TC +W+VPPQ Sbjct: 6 NLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQ 65 Query: 67 SAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLAEQRQDY 126 AVWIP GV HSN+VT + +LCFLFI P A +MP C TL +SPL ++I LA + Sbjct: 66 YAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTTQ 125 Query: 127 APHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTVAEWGQR 186 T RL VL +EL + LHLPV H ++RA+ +A++P + + +W Sbjct: 126 RAEPMTRRLIQVLFDELPQQPQQQ--LHLPVSSHPKIRAMVEMMAKEPVEWGALGQWAGF 183 Query: 187 HAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESVSAFITM 246 AMSER+ AR + ETG+SF +WR+Q+ L++ALQ L G +VQ+V+ LGY+S +AFITM Sbjct: 184 FAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITM 243 Query: 247 FRNTLGKPPARYMA 260 F+ LG+ P RY+A Sbjct: 244 FKKGLGQTPGRYIA 257