BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0065.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3325 [TK] COG0745 Response regulators consisting of a CheY-lik...    96   3e-20
PA4032 [TK] COG0745 Response regulators consisting of a CheY-lik...    79   3e-15
RSc1076 [TK] COG0745 Response regulators consisting of a CheY-li...    73   2e-13
RSc0543 [TK] COG0745 Response regulators consisting of a CheY-li...    71   6e-13
RSc1892 [TK] COG0745 Response regulators consisting of a CheY-li...    69   3e-12

>CC3325 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Ccr
           Caulobacter vibrioides
          Length = 236

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 56/77 (72%)

Query: 20  TLTRKEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGNG 79
            LT KE +LA L   +L RPLSR +L  RIWG  PD  TRT+D HVSR+R+KL L P NG
Sbjct: 152 ALTPKEFQLASLLFSNLSRPLSREYLLRRIWGQRPDLETRTLDAHVSRLRSKLHLRPSNG 211

Query: 80  YQLATVYGYGYQLERLE 96
           ++L+TVYG+GY+LE  +
Sbjct: 212 FRLSTVYGFGYRLEACD 228


>PA4032 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 238

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 3   DLARLRITHPERPGLDATLTRKEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTID 62
           D A L +T   R G   +LT +E  LA     +LGRPLSR +L ER W  E    +R +D
Sbjct: 145 DDAELTVT---RAGAPISLTEREYRLARCLFANLGRPLSREYLYERFWPHEEVLSSRPLD 201

Query: 63  THVSRIRTKLKLHPGNGYQLATVYGYGYQLERL 95
           TH+ R+R KL L    G+QL T+YGYGY+LE +
Sbjct: 202 THIYRLRNKLGLTAERGWQLLTIYGYGYRLESV 234


>RSc1076 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 251

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 50/72 (69%)

Query: 24  KEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLHPGNGYQLA 83
           +E ELALL   ++GR L+R  ++  +WG E    +RT+DTHVSR+R KL L P NG +L 
Sbjct: 167 REFELALLLFANVGRILTRTDIELALWGRELSPYSRTLDTHVSRLRKKLLLTPENGLRLR 226

Query: 84  TVYGYGYQLERL 95
            +YG+G+ LER+
Sbjct: 227 AIYGHGFCLERV 238


>RSc0543 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 246

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 11  HPER-----PGLDATLTRKEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTIDTHV 65
           HP+R      G    LT  E +LA+L   + GR LSR  +  ++WG      TRTID+HV
Sbjct: 138 HPQRRLVTLHGAPLALTGIEFQLAMLLFANAGRTLSRDHIFGQVWGRNSAEYTRTIDSHV 197

Query: 66  SRIRTKLKLHPGNGYQLATVYGYGYQLERLE 96
           SRIR KL+L P N  +L  VY +GY+L+ L 
Sbjct: 198 SRIRLKLRLEPVNEVRLVAVYKHGYRLDHLS 228


>RSc1892 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 240

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 47/78 (60%)

Query: 16  GLDATLTRKEVELALLFMQHLGRPLSRAFLQERIWGAEPDTPTRTIDTHVSRIRTKLKLH 75
           G D  L+  E  LA+    ++GR LSR+ L   +W       TRTID +VSR+R KL+LH
Sbjct: 148 GADIPLSHTEARLAIFLFCNVGRVLSRSHLFALVWRRPSLDLTRTIDRYVSRLRAKLELH 207

Query: 76  PGNGYQLATVYGYGYQLE 93
           P NG ++  +Y  GY+LE
Sbjct: 208 PANGMRIRAIYSMGYRLE 225