BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0060.p (663 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum 432 e-120 mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti 371 e-102 CC3176_2 [C] COG1014 Pyruvate Ccr Caulobacter vibrioides 344 5e-94 RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 287 5e-77 mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ... 259 1e-68 >RSc3122_2 [C] COG1014 Pyruvate Rso Ralstonia solanacearum Length = 425 Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust. Identities = 233/426 (54%), Positives = 295/426 (69%), Gaps = 9/426 (2%) Query: 232 MAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDPAHIQSTRVGTGMADLVIGCDVIVTA 291 MAAH+EG+ +VLDM+GLAQKGG V+SHV++ E P I +TR+ G ADLVIGCD IV+A Sbjct: 1 MAAHIEGKGVTVLDMAGLAQKGGAVLSHVQIGERPDTIHATRIAMGEADLVIGCDAIVSA 60 Query: 292 GRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIAKACGRDNLSLIDAGR 351 + LS++ G+T A VNS PTA F++NP+W+FP +S+E +I A G D + DA Sbjct: 61 SDEVLSKVQFGQTRAIVNSAATPTADFIKNPNWRFPGSSAEADIRAAVG-DACAFEDASA 119 Query: 352 IATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRVAAHD 411 +A L+GDAI TN +LG+AWQKGW+PL+ ALLRAIELN + V+ NK AF WGR AHD Sbjct: 120 LAVRLLGDAIYTNPLVLGFAWQKGWIPLTYDALLRAIELNGVSVDKNKTAFEWGRHLAHD 179 Query: 412 VDFVLAAAGRNG-MTAQVIEFKRTPTLDELVERRVAFLTDYQNAAYARSYRDAVEEVRAR 470 + VLA AG A+VI TLD L+ RRV LT YQNAAYA ++R VE VR Sbjct: 180 REAVLALAGAAPRAKAEVIALP--ATLDTLIARRVDLLTAYQNAAYADAFRVVVERVRTA 237 Query: 471 ESTLGEAGRGLKLSRAVATYLFKLMAYKDEYEVARLYTEPAFRAKIAGMFEG----DYKL 526 E+ + AG+ L L+ AVA L +LMAYKDEYEVARLYT+PAF K+ F+G DY+L Sbjct: 238 EAAVAGAGQPLTLTEAVARNLSRLMAYKDEYEVARLYTDPAFLDKLRAQFDGEPGRDYQL 297 Query: 527 RFHLAPPLLAKRDEMGHLRKQAFGSWMMPAFGVLAKLRFLRGTAFDPFGYTEERKQERAL 586 F LAPPL AKRDE GHL KQ FG M F +LAKLR LRGTA D FG TEER+ ERAL Sbjct: 298 NFWLAPPLWAKRDEKGHLVKQRFGPNTMRIFKLLAKLRGLRGTALDVFGKTEERRTERAL 357 Query: 587 ISEYRATLSRLLAKLTAENLEQVVAVARIPEEIRGYGHVKERHLQAAMQKQAALLAQL-E 645 I EYRA + L++ L+ + L + +AR+PE+IRG+GHVKE +L AA + LLAQ + Sbjct: 358 IGEYRALVDELVSGLSTQKLALAIDLARLPEDIRGFGHVKEANLAAARVRWGKLLAQWRD 417 Query: 646 QGSSQQ 651 G++Q+ Sbjct: 418 PGAAQR 423 >mlr5175_2 [C] COG1014 Pyruvate Mlo Mesorhizobium loti Length = 435 Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/435 (45%), Positives = 267/435 (61%), Gaps = 10/435 (2%) Query: 219 GGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDPAHIQSTRVGTGM 278 GGTGV+T+G ++ MAAH+E + C ++DM+GLAQKGG V +HVR+A P I + RV G Sbjct: 1 GGTGVVTVGAVLGMAAHLEDKGCGMIDMAGLAQKGGSVFTHVRIARTPDDIHAIRVSAGK 60 Query: 279 ADLVIGCDVIVTAGRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIAKA 338 ADLV+GCD++V+ + L+ + EG T N+ ++ F R+ D+ P + I A Sbjct: 61 ADLVLGCDLVVSGAKKVLTAVREGHTIFLANTAEIMPGEFARSADFSLPIERLKKAIRAA 120 Query: 339 CGRDNLSLIDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFN 398 G D DA R ATAL G+++ NMFMLG+A+Q G +PLS A+ RAIELN V N Sbjct: 121 AGDDKAHFFDATRTATALFGNSLGANMFMLGFAFQHGGLPLSAEAVERAIELNGEAVAMN 180 Query: 399 KQAFAWGRVAAHDVDFV---LAAAGRNGMTAQVIEFKRTPTLDELVERRVAFLTDYQNAA 455 AF WGR AAH DFV +A GR G TA V + TLDE++ RRVAFLT YQNAA Sbjct: 181 IAAFRWGRRAAHQPDFVRGLVAQPGRAGETAPVAQ-----TLDEIIARRVAFLTAYQNAA 235 Query: 456 YARSYRDAVEEVRARESTLGEAGRGLKLSRAVATYLFKLMAYKDEYEVARLYTEPAFRAK 515 Y + Y D + +RA E+ ++ A A LFKLMA KDEYEVARLYT+ +F A+ Sbjct: 236 YGKRYADRLTLLRAAETRAVPGSTA--VTEAAARNLFKLMAIKDEYEVARLYTDGSFAAE 293 Query: 516 IAGMFEGDYKLRFHLAPPLLAKRDEMGHLRKQAFGSWMMPAFGVLAKLRFLRGTAFDPFG 575 + F+ KL FHLAPP++ +R G RK +FG WMM F +LA L+ LRGTAFD FG Sbjct: 294 LGKQFQSYEKLEFHLAPPIMGRRGNDGTPRKSSFGPWMMKGFRLLAALKGLRGTAFDLFG 353 Query: 576 YTEERKQERALISEYRATLSRLLAKLTAENLEQVVAVARIPEEIRGYGHVKERHLQAAMQ 635 YT ER+ ER L+++Y L + L + VA+ +P IRGYGHV++ + A Sbjct: 354 YTAERRMERQLLAQYEGDLELVANSLAPGKADAAVALVSVPALIRGYGHVRQASAEKAAG 413 Query: 636 KQAALLAQLEQGSSQ 650 ++ LL +L +Q Sbjct: 414 ERQRLLERLSSTPTQ 428 >CC3176_2 [C] COG1014 Pyruvate Ccr Caulobacter vibrioides Length = 419 Score = 344 bits (882), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 200/431 (46%), Positives = 260/431 (60%), Gaps = 21/431 (4%) Query: 219 GGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDPAHIQSTRVGTGM 278 GGTGV T+ I+AMAAH++GRA SV+DM+GLAQKGG V SHV++ + I RV Sbjct: 1 GGTGVTTVASIMAMAAHIDGRAGSVVDMTGLAQKGGSVFSHVKIGKTEETIVGGRVPAAS 60 Query: 279 ADLVIGCDVIVTAGRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIAKA 338 AD++I CD++V A + LS + RT A NS PTA FV + D +F + + + A Sbjct: 61 ADVLIACDLLVAASPEGLSLYAKDRTRAFGNSDFAPTADFVTSRDVRFDSGAMARRVKGA 120 Query: 339 CGRDNLSLIDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFN 398 A R+A GDAI NM M+G+AWQ+G +PLS A+ RAI+LN + E N Sbjct: 121 T--KTFDACPAQRLAETEFGDAIYANMIMVGFAWQRGVIPLSSRAVYRAIKLNGVDAEAN 178 Query: 399 KQAFAWGRVAAHDVDFVLAAAGRNGMTAQVIEFKRTPT-----LDELVERRVAFLTDYQN 453 QAF GR AHD + ++ TPT LD L+ R+A LT YQN Sbjct: 179 LQAFELGRRVAHDP------------STLTVKEDTTPTPETMPLDALIAHRIAQLTAYQN 226 Query: 454 AAYARSYRDAVEEVRARESTLGEAGRGLKLSRAVATYLFKLMAYKDEYEVARLYTEPAFR 513 AAYA+ Y D V +VRA E+ + L L+RA A L+KLMAYKDEYEVARLYT+ F Sbjct: 227 AAYAQRYADKVAKVRAAETAVSGEDGALPLTRAAAVNLYKLMAYKDEYEVARLYTDGRFA 286 Query: 514 AKIAGMFEGDYKLRFHLAPPLLAKRDEMGHLRKQAFGSWMMP-AFGVLAKLRFLRGTAFD 572 A++AG F+G K + LAPPLLA + G +K AFG WM+ AF ++AK++ LRGTA D Sbjct: 287 AELAGTFKGG-KAKVWLAPPLLAPKGPDGKPKKIAFGGWMLDLAFPMMAKMKGLRGTALD 345 Query: 573 PFGYTEERKQERALISEYRATLSRLLAKLTAENLEQVVAVARIPEEIRGYGHVKERHLQA 632 FG TEER+ ER LI+ Y L RL A L AE+L V +A +P+ IRG+GHVKE + Sbjct: 346 IFGKTEERRMERGLIASYETGLDRLAAGLKAESLPLAVKIAEVPQAIRGFGHVKEASVVT 405 Query: 633 AMQKQAALLAQ 643 A +A L Q Sbjct: 406 AKAAEAKLWTQ 416 >RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Rso Ralstonia solanacearum Length = 762 Score = 287 bits (735), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 132/185 (71%), Positives = 152/185 (82%) Query: 1 VRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKY 60 +RAS+AAKVNITYK+LYNDAVAMTGGQ DGPL I+ Q+ AE I++VTDEP+KY Sbjct: 533 IRASIAAKVNITYKLLYNDAVAMTGGQPVDGPLSVPQIAAQVHAEGTSRIVIVTDEPEKY 592 Query: 61 PAGTQWAEGVTIRHRSELDAVQRELREQRGVSAMIYDQTCASEKRRRRKRNAYPDPAKRA 120 A + EGVT+ HR LDA+QRELRE G S +IYDQTCA+EKRRRRKR DPA+RA Sbjct: 593 NAAIKLPEGVTVHHRDRLDAIQRELREVPGTSVLIYDQTCATEKRRRRKRGTMADPARRA 652 Query: 121 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG 180 IN+AVCEGCGDCSV+SNCLSVEPLETE G KR+INQSSCNKD+SCVNGFCPSFVT EG Sbjct: 653 FINDAVCEGCGDCSVKSNCLSVEPLETELGTKRKINQSSCNKDFSCVNGFCPSFVTAEGA 712 Query: 181 QLKKP 185 Q++KP Sbjct: 713 QVRKP 717 >mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Mlo Mesorhizobium loti Length = 724 Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/219 (58%), Positives = 164/219 (74%), Gaps = 2/219 (0%) Query: 1 VRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKY 60 +R +++++ NITYKILYNDAVAMTGGQ +G L MI+RQ+ AE V I +VTDEPDKY Sbjct: 507 IRFALSSEANITYKILYNDAVAMTGGQPHEGGLTVDMIARQVRAEGVDRIAIVTDEPDKY 566 Query: 61 PAGTQWAEGVTIRHRSELDAVQRELREQRGVSAMIYDQTCASEKRRRRKRNAYPDPAKRA 120 + G TI HR +LD VQRELR+ +GVS ++YDQTCA+EKRRRRKR +PDP KR Sbjct: 567 AGKADFPAGATIHHRDDLDLVQRELRDVKGVSILLYDQTCAAEKRRRRKRGTFPDPDKRV 626 Query: 121 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG 180 INE +CEGCGDC VQSNC+S++P+ETEFGRKR+I+QSSCNKD+SCVNGFCPSFVTV G Sbjct: 627 FINELICEGCGDCGVQSNCVSIQPVETEFGRKRRIDQSSCNKDFSCVNGFCPSFVTVHGA 686 Query: 181 QLKKPVRAKTQSGPALPTLPEPV-LPGLAQPYGIVVTGV 218 +++K ++ P L +P P P A+ + ++ GV Sbjct: 687 KIRKAEGLAGKTDP-LDGVPTPAEFPLGAEGWAAIIDGV 724