BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0044.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0137 [E] COG0253 Diaminopimelate epimerase Rso Ralstonia sola...   127   7e-30
VC0126 [E] COG0253 Diaminopimelate epimerase Vch Vibrio cholerae      117   8e-27
PM1703 [E] COG0253 Diaminopimelate epimerase Pmu Pasteurella mul...   112   2e-25
HI0750 [E] COG0253 Diaminopimelate epimerase Hin Haemophilus inf...   111   3e-25
dapF [E] COG0253 Diaminopimelate epimerase Eco Escherichia coli K12   110   7e-25

>RSc0137 [E] COG0253 Diaminopimelate epimerase Rso Ralstonia solanacearum
          Length = 292

 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 73/99 (73%)

Query: 11  ADVPFDSRGLQHRTEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGPL 70
           A +PF    L  R E  DT   L + G+T W+S VSMGNPHAVQVV+D+EA PV  DGPL
Sbjct: 128 ARLPFVPDALPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQVVDDAEAFPVREDGPL 187

Query: 71  IEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLAC 109
           IE H  FPRRVNAGFM++ DRH I LRVYERGAGETLAC
Sbjct: 188 IESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLAC 226


>VC0126 [E] COG0253 Diaminopimelate epimerase Vch Vibrio cholerae
          Length = 290

 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 68/106 (64%), Gaps = 7/106 (6%)

Query: 10  PADVPFDSRGLQHRTEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGP 69
           P  +PF       R +  +  + L V   T +   VSMGNPH V VV+D   A V   GP
Sbjct: 141 PNKIPF-------RAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGP 193

Query: 70  LIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACA 115
           L+E HERFP RVNAGFMQVV R  INLRVYERGAGET ACG+GACA
Sbjct: 194 LLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACA 239


>PM1703 [E] COG0253 Diaminopimelate epimerase Pmu Pasteurella multocida
          Length = 274

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 69/106 (65%), Gaps = 7/106 (6%)

Query: 10  PADVPFDSRGLQHRTEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGP 69
           PA +PF +   +         + L  + +T     VSMGNPH V  V+D + A V   GP
Sbjct: 125 PAKIPFTANKFEKN-------YILRTSIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGP 177

Query: 70  LIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACA 115
           L+E+HERFP RVNAGFMQV+ R HI LRVYERGAGET ACG+GACA
Sbjct: 178 LLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACA 223


>HI0750 [E] COG0253 Diaminopimelate epimerase Hin Haemophilus influenzae
          Length = 274

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 7/106 (6%)

Query: 10  PADVPFDSRGLQHRTEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGP 69
           PA +PF +   +         + L    +T     VSMGNPH V  V+D + A V   GP
Sbjct: 125 PAKIPFTANKFEKN-------YILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGP 177

Query: 70  LIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACA 115
           L+E HERFP RVNAGFMQ++++ HI LRVYERGAGET ACG+GACA
Sbjct: 178 LLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACA 223


>dapF [E] COG0253 Diaminopimelate epimerase Eco Escherichia coli K12
          Length = 275

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 67/106 (63%), Gaps = 7/106 (6%)

Query: 10  PADVPFDSRGLQHRTEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVDGP 69
           P+ VPF       R    +  + +  A +T    VVSMGNPH V  V+D + A V   GP
Sbjct: 126 PSAVPF-------RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGP 178

Query: 70  LIEHHERFPRRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACA 115
           ++E HERFP R N GFMQVV R HI LRVYERGAGET ACG+GACA
Sbjct: 179 VLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACA 224