BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0032.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0311 [K] COG1521 Putative transcriptional regulator, homolog ... 183 4e-46 NMB2075_2 [K] COG1521 Putative transcriptional regulator, homolo... 105 7e-23 NMA0357_2 [K] COG1521 Putative transcriptional regulator, homolo... 103 4e-22 XF1795 [K] COG1521 Putative transcriptional regulator, homolog o... 83 5e-16 CC1935 [K] COG1521 Putative transcriptional regulator, homolog o... 74 2e-13 >RSc0311 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Rso Ralstonia solanacearum Length = 295 Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 127/276 (46%), Positives = 158/276 (57%), Gaps = 27/276 (9%) Query: 3 LLVDAGNTRIKWAVVADADRSLAPL---PRWQQQGAVERAQVERLARDW---GALARQAA 56 LL+DAGNTRIKWA A A WQ GA Q+ L DW A A A Sbjct: 14 LLIDAGNTRIKWAWTAADVAPPAVAPGGTPWQHAGARPHDQLAELVEDWRDCHAGAGMAP 73 Query: 57 PEEELQICVSNVAGPALRDSLQALLHGVF-GPRVIVEWFASTAERAGVRNGYRHPGQLGC 115 P+ + +S VAGPALRD+L A + VF G R+ + AS A AG+RNGYR P QLG Sbjct: 74 PD----VWISVVAGPALRDALCARIARVFDGARLRI--VASEAAAAGLRNGYRDPAQLGT 127 Query: 116 DRFAAAIGARALFPDQELLVATCGTATTIDVVSADGCFEGGMILPGFGTMATSLALNTAQ 175 DR+ A+GAR +PD LL+ T GTATT+D+V+ DG F GG+ILPG M +L+ NTAQ Sbjct: 128 DRWVGAVGARHAWPDTALLLVTAGTATTLDIVAPDGRFAGGLILPGLTLMMRALSRNTAQ 187 Query: 176 LPRI---------DGAAPPE-RLFADNTVEAIVAGCIAAQVGAIEHALAERRRLRPNVPL 225 LP I D AP + +ADNT +AI GC+ AQ GAI + P P Sbjct: 188 LPEIDIGYLAARDDAQAPADVPSWADNTQDAIALGCVTAQAGAIAQTWQALQAQYPG-PY 246 Query: 226 RCLLAGGAGLLLAPYLASGDTPLEKVDNLVLIGLHM 261 RC+L+GGA LAP+L P + DNLVL+GL + Sbjct: 247 RCVLSGGARAALAPHL---RMPFQMHDNLVLLGLQV 279 >NMB2075_2 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Nme Neisseria meningitidis MC58 Length = 254 Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 33/264 (12%) Query: 3 LLVDAGNTRIKWAVVADADRSLAPLPRWQQQGAVERAQVERLARDWGALARQAAPEEELQ 62 LL+D GN+R+KWA V + + G+ + L +W A + ++ Sbjct: 3 LLLDGGNSRLKWAWVENGT--------FATVGSAPYRDLSPLGAEWAEKA-----DGNVR 49 Query: 63 ICVSNVAGPALRDSLQALLHGVFGPRVIVEWFASTAERAGVRNGYRHPGQLGCDRFAAAI 122 I V G + +Q L R I EW S+A+ G+RN YRHP + G DR+ A+ Sbjct: 50 IVGCAVCGEFKKAQVQEQL-----ARKI-EWLPSSAQALGIRNHYRHPEEHGSDRWFNAL 103 Query: 123 GARALFPDQELLVATCGTATTIDVVSADGCFEGGMILPGFGTMATSLALNTAQLPRIDGA 182 G+R F +V +CGTA T+D ++ DG + GG I+PGF M SLA+ TA L R G Sbjct: 104 GSRR-FSRNACVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGK 162 Query: 183 APPERLFADNTVEAIVAGCIAAQVGAIEHALAERRRLRPNV----PLRCLLAGGAGLLLA 238 P F T A+ +G + A G++ + RL+ P+ ++ GG +A Sbjct: 163 RYP---FPTTTGNAVASGMMDAVCGSV---MMMHGRLKEKTGAGKPVDVIITGGGAAKVA 216 Query: 239 PYLAS---GDTPLEKVDNLVLIGL 259 L + + DNLV+ GL Sbjct: 217 EALPPAFLAENTVRVADNLVIYGL 240 >NMA0357_2 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor NmA Neisseria meningitidis Z2491 Length = 254 Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 124/264 (46%), Gaps = 33/264 (12%) Query: 3 LLVDAGNTRIKWAVVADADRSLAPLPRWQQQGAVERAQVERLARDWGALARQAAPEEELQ 62 LL+D GN+R+KWA V + + G+ + L +W + ++ Sbjct: 3 LLLDGGNSRLKWAWVENGT--------FATVGSAPYRDLSPLGAEWAEKV-----DGNVR 49 Query: 63 ICVSNVAGPALRDSLQALLHGVFGPRVIVEWFASTAERAGVRNGYRHPGQLGCDRFAAAI 122 I V G + +Q L R I EW S+A+ G+RN YRHP + G DR+ A+ Sbjct: 50 IVGCAVCGEFKKAQVQEQL-----ARKI-EWLPSSAQALGIRNHYRHPEEHGSDRWFNAL 103 Query: 123 GARALFPDQELLVATCGTATTIDVVSADGCFEGGMILPGFGTMATSLALNTAQLPRIDGA 182 G+R F +V +CGTA T+D ++ DG + GG I+PGF M SLA+ TA L R G Sbjct: 104 GSRR-FSRNACVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGK 162 Query: 183 APPERLFADNTVEAIVAGCIAAQVGAIEHALAERRRLRPNV----PLRCLLAGGAGLLLA 238 P F T A+ +G + A G++ + RL+ P+ ++ GG +A Sbjct: 163 RYP---FPTTTGNAVASGMMDAVCGSV---MMMHGRLKEKTGAGKPVDVIITGGGAAKVA 216 Query: 239 PYLAS---GDTPLEKVDNLVLIGL 259 L + + DNLV+ GL Sbjct: 217 EALPPAFLAENTVRVADNLVIHGL 240 >XF1795 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Xfa Xylella fastidiosa 9a5c Length = 242 Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 113/239 (47%), Gaps = 26/239 (10%) Query: 4 LVDAGNTRIKWAVVADADRSLAPLPRWQQQGAVERAQV-ERLARDWGALARQAAPEEELQ 62 L D GN+R K A + ++G + V L A A Q P + Sbjct: 5 LFDLGNSRFKCASL--------------REGVIGPVTVLPYLTETMDAFALQELPRGRVA 50 Query: 63 ICVSNVAGPALRDSLQALLHGVFGPRVIVEWFASTAERAGVRNGYRHPGQLGCDRFAAAI 122 S VA PA+ + +L F V+ A+ A AGVR Y HP + G DRF A + Sbjct: 51 YLAS-VAAPAITTHVLEVLKIHFEQ---VQVAATVAACAGVRIAYAHPERFGVDRFLALL 106 Query: 123 GARALFPDQELLVATCGTATTIDVVSADGCFEGGMILPGFGTMATSLALNTAQLPRIDGA 182 G+ + + +LV GTA TID+++A+GC GG I M +L QLP + G Sbjct: 107 GS---YGEGNVLVVGVGTALTIDLLAANGCHLGGRISASPTLMRQALHARAEQLP-LSGG 162 Query: 183 APPERLFADNTVEAIVAGCIAAQVGAIEHALAERRRLRPNVPLRCLLAGGAGLLLAPYL 241 E FA++T +A+V+GC A V IE +L E + R + +R LL GG L P+L Sbjct: 163 NYLE--FAEDTEDALVSGCNGAAVALIERSLYEAHQ-RLDQSVRLLLHGGGVASLLPWL 218 >CC1935 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor Ccr Caulobacter vibrioides Length = 261 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 100 RAGVRNGYRHPGQLGCDRFAAAIGARALFPDQELLVATCGTATTIDVVSADGCFEGGMIL 159 + G+ P + G DR AIGA ++P L+V GTATT D+V+ADG FEGG+I Sbjct: 94 KLGIDVRIEKPSEAGADRLVNAIGAAMVYPG-PLVVIDSGTATTFDIVAADGAFEGGIIA 152 Query: 160 PGFGTMATSLALNTAQLPRIDGAAPP-ERLFADNTVEAIVAGCIAAQVGAIEHALAERRR 218 PG +L A+LPRI P R+ +TV A+ +G + IE L R + Sbjct: 153 PGINLSMQALHEAAAKLPRIAIQRPAGNRIVGTDTVSAMQSGVFWGYISLIE-GLVARIK 211 Query: 219 LRPNVPLRCLLAGGAGLLL 237 P+ + GG L Sbjct: 212 AERGEPMTVIATGGVASLF 230