BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0017.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1093 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...   107   9e-24
PH0066 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...    73   3e-13
PAB2294 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotr...    67   2e-11
Cj0029 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...    58   7e-09

>XF1093 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Xfa Xylella fastidiosa 9a5c
          Length = 161

 Score =  107 bits (268), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 1/159 (0%)

Query: 3   LRIIATGGTFDKHYDEIAGQLGFGESHLPDVIARARITTEVSLETLRLLDSLEMQDGDRQ 62
           L I+ TGGT DK Y +       G+  +  ++    I    ++  +   DSL M + DR+
Sbjct: 4   LLIVTTGGTIDKIYFDEKSHYQVGDPQITQILEALGIAFRFNVIPIMRKDSLHMVEADRE 63

Query: 63  RVLEACQASAQQAIVIIHGTDTMQQTAQVLGQALTDKTVVLTGAMIPYEIANSDAFFNFG 122
            +     A   Q +++ HGTD+M +T + L Q++ +KT+V+TGA+ P     SDA FN G
Sbjct: 64  LIHNTITAHPCQHVLMTHGTDSMVETGKRL-QSIQNKTIVITGALNPARFHGSDAHFNIG 122

Query: 123 FACGVAQVLPPGVYVAMNGRIFAWNKVAKNRSAGVFEPI 161
            A G  Q L  GVY+AMNGRI+  NKV KN     FE I
Sbjct: 123 CAIGALQSLSSGVYIAMNGRIWHPNKVRKNIIKNCFETI 161


>PH0066 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Pho Pyrococcus horikoshii
          Length = 328

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 1   MSLRIIATGGTFDKHYDEIAGQLGFGESHLP--DVIARARITTEVSLETLRLL--DSLEM 56
           M + I+  GGT       + G+ G+ ES L    ++  A I++E  +E   L+  DS  +
Sbjct: 1   MRILILGMGGTIA----SVKGERGY-ESALSVSKILKLAGISSEAKIEARDLMNVDSTLI 55

Query: 57  QDGDRQRVLEACQASAQQ--AIVIIHGTDTMQQTAQVLGQALTDKTV--VLTGAMIPYEI 112
           Q  D +R+ +  +    +   IVI HGTDTM  +A +L   L +  +  VLTG+M+P   
Sbjct: 56  QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGSMLPITE 115

Query: 113 ANSDAFFNFGFACGVAQVLPPGVYVAMNGRIFAWNKVAKNRSAG--VFEPI 161
            NSDA FN   A    ++   G+Y+A NG++    + +K RS G   FE I
Sbjct: 116 KNSDAPFNLRTALEFVKLGIRGIYIAFNGKVMLGVRASKIRSMGFDAFESI 166


>PAB2294 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Pab Pyrococcus abyssi
          Length = 340

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 15/164 (9%)

Query: 1   MSLRIIATGGTFDKHYDEIAGQLGFGESHLPDVIA------RARITTEVSLETLRLLDSL 54
           MSL II  GGT       + G+ G+ ES L           R +I + +    L  +DS 
Sbjct: 12  MSLLIIGMGGTIA----SVKGESGY-ESALSIEEIIEISGIREKIGSSIDTIDLMNVDST 66

Query: 55  EMQDGDRQRVLEACQASA--QQAIVIIHGTDTMQQTAQVLGQALTDKTV--VLTGAMIPY 110
            +Q  D + + E  + +      IVI HGTDTM  TA +L   L +  V  V TG+M+P 
Sbjct: 67  LIQPSDWKTLAEEIERNIWDYDGIVITHGTDTMAYTASMLSFMLRNPPVPIVFTGSMLPA 126

Query: 111 EIANSDAFFNFGFACGVAQVLPPGVYVAMNGRIFAWNKVAKNRS 154
              NSDA  N   A   A+    G+Y+A NG++    + +K RS
Sbjct: 127 SEKNSDAPLNLYTALKFAETGIRGIYIAFNGKVMLGVRASKVRS 170


>Cj0029 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Cje Campylobacter jejuni
          Length = 331

 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 3   LRIIATGGTFDKHYDEIAGQLGFGESHLP-DVIARA----RITTEVSLETLRLLDSLEMQ 57
           + I+ TGGT     D      G+    +  DV+ +A    R   ++S E +  +DS  M 
Sbjct: 8   IAILGTGGTIAGFIDSTIATTGYAAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMC 67

Query: 58  DGDRQRVLEACQ---ASAQQAIVIIHGTDTMQQTAQVLGQAL-TDKTVVLTGAMIPYEIA 113
           D    R+ +      A     +VI HGTDTM++TA  L   + +DK VVL GAM P    
Sbjct: 68  DEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAI 127

Query: 114 NSDAFFNFGFACGVA---QVLPPGVYVAMNGRIFAWNKVAKNRSAGV 157
           ++D   N   A  +    +    GV VA+N +I +   V K  S  V
Sbjct: 128 SADGPKNLYNAVALVVNKEAKNKGVMVAINDKILSARGVVKTHSLNV 174