BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0015.p (352 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5383 [S] COG2855 Predicted membrane protein Pae Pseudomonas ae... 327 2e-89 yeiH [S] COG2855 Predicted membrane protein Eco Escherichia coli... 324 2e-88 ECs3050 [S] COG2855 Predicted membrane protein Ecs Escherichia c... 324 2e-88 STM2202 [S] COG2855 Predicted membrane protein Sty Salmonella ty... 321 2e-87 ZyeiH [S] COG2855 Predicted membrane protein EcZ Escherichia col... 320 2e-87 >PA5383 [S] COG2855 Predicted membrane protein Pae Pseudomonas aeruginosa Length = 355 Score = 327 bits (838), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 199/321 (61%), Positives = 230/321 (71%), Gaps = 9/321 (2%) Query: 2 RTAIQTSSLPPAAAGLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPR 61 R Q L P GL LS A+A A+ LG WLQ++G SALT+AIVLGIL+GNT+YPR Sbjct: 11 RPLAQVQKLIP---GLLLSAALAGVAILLGRSQWLQHNGISALTLAIVLGILVGNTLYPR 67 Query: 62 LGAYCGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGT 121 + A GV FSKQ LLRAGIILYG RLTFQDIA VG+ GV++DA ML STFGLA L+GT Sbjct: 68 IAAGSAAGVGFSKQILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGT 127 Query: 122 KLLKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLL 181 +L LDR LLIGAGSSICGAAAVMATEPV+R R+EQV VAVSTVV+FG+L IFLYP L Sbjct: 128 RLFGLDRTTTLLIGAGSSICGAAAVMATEPVVRGRAEQVAVAVSTVVVFGTLGIFLYPAL 187 Query: 182 YTLQAEPVWGLRLPD---FGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLA 238 + L + WGL D +GVYIG+TVHEVAQV+AA RSI AD AVI KMVRVMMLA Sbjct: 188 FQLDQD--WGLLPRDPGTWGVYIGATVHEVAQVVAAGRSIGIEAADTAVIAKMVRVMMLA 245 Query: 239 PFLLMLSMKAAPSAAAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQAD 298 PFL++LS A A + AT K++IPWFA F+ V NS LP A+ V D Sbjct: 246 PFLILLSAWLARDKAHRRQHSGAT-KITIPWFAVGFVLVAGLNSLVSLPPALVSHVNDLD 304 Query: 299 TLMLAMAMAALGLSTHLSALR 319 T +LAMAMA LGL THLSA+R Sbjct: 305 TFLLAMAMAGLGLGTHLSAIR 325 >yeiH [S] COG2855 Predicted membrane protein Eco Escherichia coli K12 Length = 349 Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 182/337 (54%), Positives = 244/337 (72%), Gaps = 6/337 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GLALS + A+ G+I + GFSALT+AI+LG+++GNT+YP + C GV F+KQ Sbjct: 19 GLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQ 78 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLR GIILYGFRLTF IA VG++G++ID L STF LA +G K+ LD+ + LIG Sbjct: 79 YLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIG 138 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAV+ATEPV++A + +VTVAV+TVVIFG++AIFLYP +Y L ++ W Sbjct: 139 AGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQ--W-FSPE 195 Query: 196 DFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSAAAA 255 FG+YIGSTVHEVAQV+AA +I + AVI+KM+RVMMLAPFL++L+ + + A Sbjct: 196 TFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGAN 255 Query: 256 SGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLSTHL 315 SG K++IPWFA FI V +FNSF LP +V +++ DT +LAMAMAALGL+TH+ Sbjct: 256 SG---EKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHV 312 Query: 316 SALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352 SAL+ AG KP+++ VLFAWL++GG +N + ++A Sbjct: 313 SALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIA 349 >ECs3050 [S] COG2855 Predicted membrane protein Ecs Escherichia coli O157:H7 Length = 349 Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 182/337 (54%), Positives = 244/337 (72%), Gaps = 6/337 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GLALS + A+ G+I + GFSALT+AI+LG+++GNT+YP + C GV F+KQ Sbjct: 19 GLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQ 78 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLR GIILYGFRLTF IA VG++G++ID L STF LA +G K+ LD+ + LIG Sbjct: 79 YLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIG 138 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAV+ATEPV++A + +VTVAV+TVVIFG++AIFLYP +Y L ++ W Sbjct: 139 AGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQ--W-FSPE 195 Query: 196 DFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSAAAA 255 FG+YIGSTVHEVAQV+AA +I + AVI+KM+RVMMLAPFL++L+ + + A Sbjct: 196 TFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGAN 255 Query: 256 SGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLSTHL 315 SG K++IPWFA FI V +FNSF LP +V +++ DT +LAMAMAALGL+TH+ Sbjct: 256 SG---EKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHV 312 Query: 316 SALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352 SAL+ AG KP+++ VLFAWL++GG +N + ++A Sbjct: 313 SALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIA 349 >STM2202 [S] COG2855 Predicted membrane protein Sty Salmonella typhimurium LT2 Length = 349 Score = 321 bits (823), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/337 (54%), Positives = 245/337 (72%), Gaps = 6/337 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GLALS + A+ G I + GFSALT+AI+LG++IGNT+YP++ C GV F+KQ Sbjct: 19 GLALSAVITGVALWGGAIPAVAGAGFSALTLAILLGMVIGNTIYPQIWKQCDGGVLFAKQ 78 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLR GIILYGFRLTF IA VG++G+VID L STF LA +G K+ LDR + LIG Sbjct: 79 HLLRLGIILYGFRLTFSQIADVGISGIVIDVLTLSSTFMLACFLGQKVFGLDRHTSWLIG 138 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAV+ATEPV++A + +VTVAV+TVVIFG++AIFLYP +Y L A W Sbjct: 139 AGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTIAIFLYPAMYPLLAH--W-FSPE 195 Query: 196 DFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSAAAA 255 +G+YIGST+HEVAQV+AA ++ + AVI KM+RVMMLAPFL++L+ + + A Sbjct: 196 TYGIYIGSTMHEVAQVVAAGHAVSPDAENAAVIAKMLRVMMLAPFLIILAAR-VKQLSPA 254 Query: 256 SGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLSTHL 315 +GA ++ K++IPWFA FI V +FNSF LP AV +++ DT++LAMAMAALGL+TH+ Sbjct: 255 TGAEKS--KITIPWFAIFFIVVAIFNSFHLLPKAVVDMLVTLDTVLLAMAMAALGLTTHV 312 Query: 316 SALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352 SAL+ AG KP+++ LFAWL+IGG +N + L+A Sbjct: 313 SALKKAGAKPLLMALALFAWLIIGGGAINVLIHSLIA 349 >ZyeiH [S] COG2855 Predicted membrane protein EcZ Escherichia coli O157:H7 EDL933 Length = 349 Score = 320 bits (821), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 181/337 (53%), Positives = 243/337 (72%), Gaps = 6/337 (1%) Query: 16 GLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYPRLGAYCGEGVRFSKQ 75 GLALS + A+ G+I + GFSALT+AI+LG+++GNT+YP + C GV F+KQ Sbjct: 19 GLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQ 78 Query: 76 TLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVGTKLLKLDRDAALLIG 135 LLR GIILYGFRLTF IA VG++G++ID L STF LA +G K+ LD+ + LIG Sbjct: 79 YLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIG 138 Query: 136 AGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPLLYTLQAEPVWGLRLP 195 AGSSICGAAAV+ATEPV++A + +VTVAV+TVVIFG++AIFLYP +Y L ++ W Sbjct: 139 AGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQ--W-FSPE 195 Query: 196 DFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPFLLMLSMKAAPSAAAA 255 FG+YIGSTVHEVAQV+AA +I + AVI+KM+RVMMLAPFL++L+ + + A Sbjct: 196 TFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGAN 255 Query: 256 SGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTLMLAMAMAALGLSTHL 315 SG K++IPWFA FI V +FNSF LP +V +++ DT +LAMAMAALGL+TH+ Sbjct: 256 SG---EKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHV 312 Query: 316 SALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352 SAL+ AG K +++ VLFAWL++GG +N + ++A Sbjct: 313 SALKKAGAKXLLMALVLFAWLIVGGGAINYVIQSVIA 349